View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_20 (Length: 462)
Name: NF19128_low_20
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_20 |
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| [»] scaffold0070 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 25628595 - 25629035
Alignment:
| Q |
18 |
gtaaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaattgtagactaacatccaagtacattt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25628595 |
gtaaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaattgtagactaacatccaagtacattt |
25628694 |
T |
|
| Q |
118 |
tgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaacaaaatctatcaagttggaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25628695 |
tgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaacaaaatctatcaagttggaatc |
25628794 |
T |
|
| Q |
218 |
cccaa-nnnnnnnnctcaattcaaccctagaaacgagaa-ttttttcttagattgnnnnnnngtaagaagttgaactaacctactgaaattgacacatta |
315 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
25628795 |
cccaattttttttcctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtaagaagttgaactaacccactgaaattgacacatta |
25628894 |
T |
|
| Q |
316 |
tacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcattt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25628895 |
tacttgagatcttaaataaagttcagagaagcacaccattagaattataaagttatatctttttaatcataaataaaaacctttatatatactttcattt |
25628994 |
T |
|
| Q |
416 |
catcttgatatcttctcatacaacgttacttttcttctctc |
456 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
25628995 |
catcttgatatcttctcatacaacattacttttcttctctc |
25629035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 25326405 - 25326776
Alignment:
| Q |
86 |
acagaattgtagactaacatccaagtacattttgt--gaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacaga |
183 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25326405 |
acagaactgtagactaacatccaagtacattttgtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatattttaagcaacaga |
25326504 |
T |
|
| Q |
184 |
aataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaattttttcttagattgnnnnnnngtaaga |
283 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
25326505 |
aataaaccttaacaaaatctataaagttggaatccccaa-tttttttctcaattcaaccctagaaacaagaattttttcttacattgtttttttttaaga |
25326603 |
T |
|
| Q |
284 |
agttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaatc |
383 |
Q |
| |
|
|||||||| |||| || ||||||||||||| ||||| |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||| |
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| T |
25326604 |
agttgaaccaacccaccaaaattgacacattgaacttgtgatcttaaataaagttaagagaagcaaaccaccataattataaagttatatctttttaatc |
25326703 |
T |
|
| Q |
384 |
ataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgttacttttcttctctc |
456 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
25326704 |
ataaataaaaacctttatatatactttcatttcatctctctatcttctcatacaacgttgtttttcttctctc |
25326776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 183 - 442
Target Start/End: Complemental strand, 24895027 - 24894769
Alignment:
| Q |
183 |
aaataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaatttttt-cttagattgnnnnnnngtaa |
281 |
Q |
| |
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||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||| |
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| T |
24895027 |
aaataaaacttaacaaaatctataaagttagaatccccaattttttt-ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtat |
24894929 |
T |
|
| Q |
282 |
gaagttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaa |
381 |
Q |
| |
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|||||||||| |||| || ||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
24894928 |
gaagttgaaccaacccacagaaattgacacgcga-acttgagatcttaaataaagttaagaaaagcacaccaccaaaattataaagttatatctttttaa |
24894830 |
T |
|
| Q |
382 |
tcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgtt |
442 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24894829 |
tcataaataaaaacctttatatatactttcatttcatctctctatcttctcatacaacgtt |
24894769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 24895215 - 24895051
Alignment:
| Q |
18 |
gtaaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaattgtagactaacatccaagtacattt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
24895215 |
gtaaggtcattgggaaccaataatttcattgaaaagttactataaaattctagtataatctagtaat---------------taacatccaagtacattt |
24895131 |
T |
|
| Q |
118 |
-tgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaac |
196 |
Q |
| |
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| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24895130 |
gtatgaacaaaaaatctaaccatcatatcgaccaaaattaatttttctttatattttaagcaacagaaataaaccttaac |
24895051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 25326367 - 25326405
Alignment:
| Q |
18 |
gtaaggtcattcagaaccaataatttcattgaaaagtta |
56 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||| |
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| T |
25326367 |
gtaagttcattgagaaccaataatttcattgaaaagtta |
25326405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 231 - 448
Target Start/End: Complemental strand, 31301 - 31084
Alignment:
| Q |
231 |
ctcaattcaaccctagaaacgagaattttttcttagattgnnnnnnngtaagaagttgaactaacctactgaaattgacacattatacttgagatcttaa |
330 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||||||||||| |
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| T |
31301 |
ctcaattcaaccatagaaacaagaattttttcttagattgtttttttttaagaagttgaaccaaccaaccgaaattgacacattcaacttgagatcttaa |
31202 |
T |
|
| Q |
331 |
ataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttc |
430 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31201 |
ataaagttaagagaagcacaccaccaaacttataaagttgtatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
31102 |
T |
|
| Q |
431 |
tcatacaacgttactttt |
448 |
Q |
| |
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|||||||||||| ||||| |
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| T |
31101 |
tcatacaacgttgctttt |
31084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 31555 - 31369
Alignment:
| Q |
18 |
gtaaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaatt----gtagactaacatccaagtac |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | | |||||||||||||||||||| |
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|
| T |
31555 |
gtaaggtcattgagaaccaataatttcattgaaaagttattataaaattcaagtataatctagtaattacatatataacagtagactaacatccaagtac |
31456 |
T |
|
| Q |
114 |
attttgt--gaacaaaaaatctaaccatcctatcgaccaaaattaatttctct--ttatattttaagcaacagaaataaaccttaac |
196 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
31455 |
attttgtatgaacaaaaaatctaaccatcctaacgaccaaaattaatttatcttattatattttaagcaacagaaataaaccttaac |
31369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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