View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_22 (Length: 452)
Name: NF19128_low_22
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 45658838 - 45659274
Alignment:
| Q |
1 |
aaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagacaatggtaaggttct |
100 |
Q |
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| T |
45658838 |
aaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagacaatggtaaggttct |
45658937 |
T |
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| Q |
101 |
actcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcagatcaagaggaaac |
200 |
Q |
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| T |
45658938 |
actcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcagatcaagaggaaac |
45659037 |
T |
|
| Q |
201 |
tgaagaactcaagcttctcactgaatggaagagaaagaaaggtggattcagggcttctatgtttatttttggtaagctgaagtataaacaaaaactcttt |
300 |
Q |
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| T |
45659038 |
tgaagaactcaagcttctcactgaatggaagagaaagaaaggtggatttagggcttctatgtttatttttggtaagctgaagtataaacaaaaactcttt |
45659137 |
T |
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| Q |
301 |
gttggttctgttttttgctgatttgaa-tttgatgcaaaatatgttcttgttttttgatgtagtattgtcagcattggacaacatgggttttgtggcaaa |
399 |
Q |
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| T |
45659138 |
gttggttctgttttttgctgatttgaattttgatgcaaactatgttcttgttttttgatgtagtattgtcagcattggacaacatgggttttgtggcaaa |
45659237 |
T |
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| Q |
400 |
catggttagcttagttctatatttttatggagtgatg |
436 |
Q |
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| T |
45659238 |
catggttagcttagttctatatttttatggagtgatg |
45659274 |
T |
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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 436
Target Start/End: Complemental strand, 37984345 - 37984267
Alignment:
| Q |
358 |
tgtagtattgtcagcattggacaacatgggttttgtggcaaacatggttagcttagttctatatttttatggagtgatg |
436 |
Q |
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|||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||| ||| |||||||||| |
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| T |
37984345 |
tgtagttttgtcagcattggataacatgggttttgtgacaaacatggtgagcttagtactatactttattggagtgatg |
37984267 |
T |
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