View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_23 (Length: 433)
Name: NF19128_low_23
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 21 - 428
Target Start/End: Original strand, 6853606 - 6854014
Alignment:
| Q |
21 |
ggagcagctcaatccttttctgtatacaattgtgtttaactaagggcaatacttttacagattctatcatggatcaagagtttctaactgctcctgtgaa |
120 |
Q |
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| T |
6853606 |
ggagcagctcaatctttttctgtatacaattgtgtttaacaaagggcaatacttttacagattctatcatggatcaagagtttctaactgctcctgtgaa |
6853705 |
T |
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| Q |
121 |
ttctgctgttgacaagtttcaacttattcccgagttcctcaaggtaactaactcgttcgttagcattcttgtttgcgccatgacgatttcagagataata |
220 |
Q |
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| T |
6853706 |
ttctgctgttgacaagtttcaacttattcctgagttcctcaaggtaactaactcgttcgttagcattcttgtttgcgtcatgacgatttcagagataata |
6853805 |
T |
|
| Q |
221 |
atgataccaatgaatgaatagttttcactaaccgatgattctcactgaattcaannnnnnnaggttagaggattggtgaaacaacatttggattctttta |
320 |
Q |
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| T |
6853806 |
atgataccaatgaatgaatagttttcactaaccgatgattctcactgaattcaatttttttaggttagaggattggtgaaacaacatttggattctttta |
6853905 |
T |
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| Q |
321 |
actatttcgtgaatact-gcatcaagaaaattgttcgtgcaaatgatcatgtcgaagctactaggcacccatatatttatctgaggtatggattatgtcc |
419 |
Q |
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| T |
6853906 |
actatttcgtgaatactggcatcaagaaaattgttcgtgcaaatgatcgtgtcgaagctactaggcacccatatatttatctgaggtatggattatgtcc |
6854005 |
T |
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| Q |
420 |
tatgctact |
428 |
Q |
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| T |
6854006 |
tatgctact |
6854014 |
T |
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Back To:
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 8463727 - 8463805
Alignment:
| Q |
282 |
aggttagaggattggtgaaacaacatttggattcttttaactatttcgtgaatactg-catcaagaaaattgttcgtgc |
359 |
Q |
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| T |
8463727 |
aggttagaggattggtgaagcaacatttagattcatttaactattttgttaacaccgatatcaagaaaattgttcgtgc |
8463805 |
T |
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