View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_25 (Length: 407)
Name: NF19128_low_25
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 27145058 - 27145461
Alignment:
| Q |
1 |
gacccaaaaggaatgaactcgaagttacttcctttgaaatccggcataccctcgttcaagaaccttgacgggttaaatttctctggctcgtcccacgcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145058 |
gacccaaaaggaatgaactcgaagttacttcctttgaaatccggcataccctcgttcaagaaccttgacgggttaaatttctctggctcgtcccacgcgc |
27145157 |
T |
|
| Q |
101 |
ttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtatcttctgctgtctcatggagaag |
200 |
Q |
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| T |
27145158 |
ttttgtcgcgtccaattgcccacacgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtatcttctgctgtctcatggagaag |
27145257 |
T |
|
| Q |
201 |
taagggaattggagggtggagtcgcaatgtttctttgataatgcatttgagataagtcaatttttctagatcggtttcgttgaactttcgacctaaacca |
300 |
Q |
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| T |
27145258 |
taagggaattggagggtggagtcgcaatgtttctttgataatgcatttgagataagtcaatttttctagatcggtttcgttgaactttcgacctaaacca |
27145357 |
T |
|
| Q |
301 |
ataacatcggtgagctcttgttgaatcttttgaagatctttggggcttttcattagctctgccattgtccattctatcactgatgctactgtctctgctc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
27145358 |
ataacatcggtgagctcttgttgaatcttttgaagatctttggggcttttcattagctctgccattgtccattctatcactgatgctactgtctcagttc |
27145457 |
T |
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| Q |
401 |
ctcc |
404 |
Q |
| |
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|||| |
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| T |
27145458 |
ctcc |
27145461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21181802 - 21181603
Alignment:
| Q |
1 |
gacccaaaaggaatgaactcgaagttacttcctttgaaatccggcataccctcgttcaagaaccttgacgggttaaatttctctggctcgtcccacgcgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21181802 |
gacccaaaaggaatgaactcgaagttacttcctttgaaatccggcataccctcgttcaagaaccttgacgggttaaatttctctggctcgtcccaagcgc |
21181703 |
T |
|
| Q |
101 |
ttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtatcttctgctgtctcatggagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181702 |
ttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtatcttctgctgtctcatggagaag |
21181603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 21180644 - 21180597
Alignment:
| Q |
193 |
tggagaagtaagggaattggagggtggagtcgcaatgtttctttgata |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21180644 |
tggagaagtaagggaattggagggtggagtcgcaatgtttctttgata |
21180597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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