View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_low_26 (Length: 398)
Name: NF19128_low_26
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 37602015 - 37601645
Alignment:
| Q |
10 |
aagaatataacaccagataaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaatattgggat |
109 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602015 |
aagaaaataacaccaggtaaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaatctaacaatattgggat |
37601916 |
T |
|
| Q |
110 |
gcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37601915 |
gcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatctacaaaaccaaatggaattaaattaaatttaaacatcataaaaggagcac |
37601816 |
T |
|
| Q |
210 |
aatgcaaaattcatttatatggagtt-nnnnnnnnggaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttata |
308 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37601815 |
aatgcaaaattcatttatatggagttaaaaaaaaaagaccttaaagcctctttcaatgaacttgacagcatataactcgccactccatttttcccttata |
37601716 |
T |
|
| Q |
309 |
agctttgcaacaccaaagttacctgatccaatatctttaattatttcatatctttccatggttaagcttga |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37601715 |
agctttgcaacaccaaagttacctgatccaatatctttaattatttcatatctttccatggttaagcttga |
37601645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 39410729 - 39410650
Alignment:
| Q |
81 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatct |
39410650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 27107715 - 27107793
Alignment:
| Q |
82 |
acctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
160 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||| ||||| || || || |||||||| || | |||||||||| |
|
|
| T |
27107715 |
acctctttgaacctaacaatattaggatgcttcaatgatctatggttcatgatttccctttggacattatcatcaatct |
27107793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 12309331 - 12309285
Alignment:
| Q |
97 |
acaatattgggatgcttcaatgacctatgatttataatctccctttg |
143 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
12309331 |
acaatattgggatgcctcagtgatctatgatttataatttccctttg |
12309285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University