View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_27 (Length: 397)
Name: NF19128_low_27
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 175 - 379
Target Start/End: Original strand, 36603239 - 36603443
Alignment:
| Q |
175 |
aaaaacatgtataccacaatgcatcaggaaaggggatagcaaatattcaacagataccttcttgtacattgttttgaaaaacgcgtgaagattctgaaca |
274 |
Q |
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| T |
36603239 |
aaaaacatgtataccacaatgcatcaggaaaggggatagcaaatattcaacagataccttcttgtacattgttttgaaaaacgcgtgaagattctgaaca |
36603338 |
T |
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| Q |
275 |
tctcctgccagatcctgattaacagaagagatgatgagtcaaagatgtctgcaacatagctaaattgtttaaagtgtccaaaatgctaactgttgggcat |
374 |
Q |
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| T |
36603339 |
tctcctgccagatcctgattaacagaagagatgatgagtcaaagatgtctgcaacatagctaaattgtttaaagtgtccaaaatgctaactgttgggcat |
36603438 |
T |
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| Q |
375 |
ttact |
379 |
Q |
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||||| |
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| T |
36603439 |
ttact |
36603443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 36603054 - 36603241
Alignment:
| Q |
15 |
cacagattaataatgctttcttaccttttcatattccccttgtacttcttgtacagctcaatcaaatcatttttctctgagtcagaacttcggtagtttg |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36603054 |
cacaaattaataatgctttcttaccttttcatattccccttgtacttcttgtacagctcaatcaaatcatttttctctgagtcagaaccccggtagtttg |
36603153 |
T |
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| Q |
115 |
cttcaaactcctcaatatcagcttcagtaacctgtggttcattacnnnnnnnnnncacataaaaacatgtataccacaatgcatcaggaaa |
205 |
Q |
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| T |
36603154 |
cttcaaactcctcaatatcagcttcagtaacctgtggttcattac---aaaaaaacacataaaaacatgtataccacaatgcatcaggaaa |
36603241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 20992251 - 20992130
Alignment:
| Q |
26 |
aatgctttcttaccttttcatattccccttgtacttcttgtacagctcaatcaaatcatttttctctgagtcagaacttcggtagtttgcttcaaactcc |
125 |
Q |
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|||||||| |||||| |||||||| |||||| | | |||||| || ||| |||||||||||||| |||||||| | | |||||||||||||||||| |
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| T |
20992251 |
aatgctttattacctgttcatattacccttgcattccttgtaaagtctaattaaatcatttttctcagagtcagatcccctatagtttgcttcaaactcc |
20992152 |
T |
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| Q |
126 |
tcaatatcagcttcagtaacct |
147 |
Q |
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||||||||||||||||| |||| |
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| T |
20992151 |
tcaatatcagcttcagtgacct |
20992130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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