View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_low_29 (Length: 387)

Name: NF19128_low_29
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_low_29
NF19128_low_29
[»] chr1 (19 HSPs)
chr1 (17-358)||(27782076-27782417)
chr1 (26-358)||(27777544-27777874)
chr1 (27-139)||(38226776-38226888)
chr1 (104-323)||(27781222-27781439)
chr1 (242-311)||(38226961-38227030)
chr1 (26-128)||(17700130-17700232)
chr1 (272-328)||(27781061-27781117)
chr1 (272-327)||(27781179-27781234)
chr1 (248-305)||(17663585-17663642)
chr1 (330-387)||(27777545-27777602)
chr1 (330-387)||(27782359-27782416)
chr1 (32-140)||(21898914-21899021)
chr1 (272-328)||(27781100-27781156)
chr1 (33-104)||(17663772-17663843)
chr1 (245-305)||(21899127-21899187)
chr1 (272-323)||(27781144-27781195)
chr1 (248-298)||(17700337-17700387)
chr1 (258-313)||(38227049-38227104)
chr1 (32-92)||(22663446-22663506)
[»] chr4 (3 HSPs)
chr4 (33-311)||(35249931-35250217)
chr4 (245-305)||(51220007-51220067)
chr4 (246-305)||(51220795-51220854)
[»] chr7 (1 HSPs)
chr7 (245-311)||(440901-440967)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 27782076 - 27782417
Alignment:
Q  17 taatactagtttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  27782076 taatactagtttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaa 27782175  T
Q  117 ttgctcaataattcatgatgatatattttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcata 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782176 ttgctcaataattcatgatgatatactttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcata 27782275  T
Q  217 atatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatcatc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27782276 atatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcacatcatc 27782375  T
Q  317 acttggaagctcaaaattcatcacatcattacttgcaagctc 358  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  27782376 acttgaaagctcaaaattcatcacatcattacttggaagctc 27782417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 27777874 - 27777544
Alignment:
Q  26 tttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaattgctcaat 125  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27777874 tttagtttcactcaaacaaaacaagaagattaagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagcaaattgctcaat 27777775  T
Q  126 aattcatgatgatatattttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattc 225  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777774 aattcatgatgatat--tttaactagaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattc 27777677  T
Q  226 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatcatcacttggaag 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  27777676 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcacatcatcacttgtaag 27777577  T
Q  326 ctcaaaattcatcacatcattacttgcaagctc 358  Q
    |||||||||||||||||||||||||| ||||||    
T  27777576 ctcaaaattcatcacatcattacttggaagctc 27777544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 38226776 - 38226888
Alignment:
Q  27 ttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaattgctcaata 126  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38226776 ttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 38226875  T
Q  127 attcatgatgata 139  Q
    |||||||||||||    
T  38226876 attcatgatgata 38226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 323
Target Start/End: Complemental strand, 27781439 - 27781222
Alignment:
Q  104 tcttgtaaggaaattgctcaataattcatgatgatatattttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatccca 203  Q
    ||||||||| |||||||||||||||||||||||||||| ||    ||||| ||||         | |||||||||||||||||||||||||| |||||||    
T  27781439 tcttgtaagcaaattgctcaataattcatgatgatatactt----taaaaaaatt--------cgcaaattacatgacaacatcaagggtatccatccca 27781352  T
Q  204 tacaaaattcataatatcattcaaaatcat----------taaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttc 293  Q
    || |||||||||||||||||||||||||||          ||||| |||||||||| |||| |   |||||||||| ||| ||  ||||||| | |||||    
T  27781351 taaaaaattcataatatcattcaaaatcattaaaaagatataaactaagacgagacgctaaatatcttcatcttcaaaattatttcttggaagcacgttc 27781252  T
Q  294 aaatctaaattcttcacatcatcacttgga 323  Q
     |||| |||||||||||||||||| |||||    
T  27781251 gaatcaaaattcttcacatcatcaattgga 27781222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 38226961 - 38227030
Alignment:
Q  242 gacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 311  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  38226961 gacgagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcaca 38227030  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 17700130 - 17700232
Alignment:
Q  26 tttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaattgctcaat 125  Q
    ||||| ||||| ||||||||| ||||||||||||||||    ||||||||||||||||||| ||||| |||||||||||| ||| || ||| || |||||    
T  17700130 tttagattcacacaaacaaaattagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaactgttcaat 17700229  T
Q  126 aat 128  Q
    |||    
T  17700230 aat 17700232  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 27781117 - 27781061
Alignment:
Q  272 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacttggaagctc 328  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattcttcatatcatcacttggaagctc 27781061  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 27781234 - 27781179
Alignment:
Q  272 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacttggaagct 327  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27781234 atcatcaattggatactcgttcaaatcaaaattcttcacatcatcacttggaagct 27781179  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 17663642 - 17663585
Alignment:
Q  248 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 305  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  17663642 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 17663585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 27777602 - 27777545
Alignment:
Q  330 aaattcatcacatcattacttgcaagctcaaaactcatcacatcattacttggaagct 387  Q
    |||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  27777602 aaattcttcacatcatcacttgtaagctcaaaattcatcacatcattacttggaagct 27777545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 27782359 - 27782416
Alignment:
Q  330 aaattcatcacatcattacttgcaagctcaaaactcatcacatcattacttggaagct 387  Q
    |||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  27782359 aaattcttcacatcatcacttgaaagctcaaaattcatcacatcattacttggaagct 27782416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 21898914 - 21899021
Alignment:
Q  32 ttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaattgctcaataattca 131  Q
    ||||| ||||||||| |||||||||||||||||   ||||||||||||||||| ||| ||| |||||||| ||| ||| || ||| || |||||||| ||    
T  21898914 ttcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgat-aaccaaaatttatataaatcgtgtcagcaaactgttcaataatcca 21899012  T
Q  132 tgatgatat 140  Q
    | |||||||    
T  21899013 taatgatat 21899021  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 27781156 - 27781100
Alignment:
Q  272 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacttggaagctc 328  Q
    ||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  27781156 atcatcaattggatactcgttcaaatcaaaattcttcgcatcatcacttggaagctc 27781100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 17663843 - 17663772
Alignment:
Q  33 tcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatat 104  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||||| || ||||| |||||||||||    
T  17663843 tcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatat 17663772  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 21899127 - 21899187
Alignment:
Q  245 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 305  Q
    ||||||||||||||||||||||||| |||| ||||||| || ||| |||||||| ||||||    
T  21899127 gagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattc 21899187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 27781195 - 27781144
Alignment:
Q  272 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacttgga 323  Q
    |||||||||||||| || ||||||||| |||||||||||||||||| |||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcacatcatcaattgga 27781144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 17700337 - 17700387
Alignment:
Q  248 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatc 298  Q
    |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  17700337 acactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatc 17700387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 38227049 - 38227104
Alignment:
Q  258 gtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatc 313  Q
    |||||| |||||  ||||||||||||||  ||||||||||| ||||||||||||||    
T  38227049 gtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatc 38227104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 22663446 - 22663506
Alignment:
Q  32 ttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaa 92  Q
    ||||| ||||||||| ||||||||||| |||||   ||||||||||||| ||||| |||||    
T  22663446 ttcacacaaacaaaattagaagattaacacaaacacaaaaggtggaaatggataacctaaa 22663506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 311
Target Start/End: Original strand, 35249931 - 35250217
Alignment:
Q  33 tcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaaggaaattgctcaataattcat 132  Q
    |||||||||||||| ||||||| |||||||||||||||||||   ||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||    
T  35249931 tcactcaaacaaaattagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcat 35250030  T
Q  133 gatgatatattttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattcaaaatca 232  Q
    ||||  ||||||||||||||  | ||   ||||| ||||||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  35250031 gatg--atattttaactaaacaacttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatca 35250128  T
Q  233 t----------taaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 311  Q
    |          ||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  35250129 ttaaaaagatataaaccaagacgagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcaca 35250217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 51220007 - 51220067
Alignment:
Q  245 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 305  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| ||||||    
T  51220007 gagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattc 51220067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 51220795 - 51220854
Alignment:
Q  246 agacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 305  Q
    |||||||| ||||||||||||||| || |||||||||||| ||||||||| || ||||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattc 51220854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 440901 - 440967
Alignment:
Q  245 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 311  Q
    |||||||||||| |||||||||||| | ||||||||||||| |||||||||||| ||||||||||||    
T  440901 gagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcaca 440967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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