View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_3 (Length: 744)
Name: NF19128_low_3
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 729
Target Start/End: Original strand, 3985281 - 3985998
Alignment:
| Q |
19 |
tatagtagtataaagaaccttttaactaaacttcatcgattaagttgtcgtagggatttcgatgggtcaatcgtttttgattcgatattgggagttagtg |
118 |
Q |
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| T |
3985281 |
tatagtagtataaagaaccttttaactaaacttcatcgattaagttgtcgtagggatttcaatgggtcaatcgttttttattcgatattgggagttagtg |
3985380 |
T |
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| Q |
119 |
tgtagcttcagatttttgggatggtcatggtgcctttttcgatggaccgagagttgaggagtgccttattgatttgcttatggagtttggtggggcgatc |
218 |
Q |
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| T |
3985381 |
tgtagcttcagatttttgggatggtcatggtgcctttttcgatggaccgagagttgaggagtgccttagtgatttgcttatggagtttgatggggcgatc |
3985480 |
T |
|
| Q |
219 |
acttttgctttgagattgagaatcaagttctagactaaagtcaattgggcttgtttggtgtcttctccggcagaccgggggtcaatcggtggtggaatct |
318 |
Q |
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| T |
3985481 |
acttttgctttgagattgagaatcaagttctagactaaagtcaattgggcttgtttggtgtcttctccggcagaccgggggtcaatcggtggtggaatct |
3985580 |
T |
|
| Q |
319 |
gaatgagtgtggnnnnnnnntgcttttatggtgnnnnnnnnnnnngcgaagagatgtttttatggtgtttattggagctcaagggtgggaagagaatgtg |
418 |
Q |
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| T |
3985581 |
gaatgagtgtg--aaaaaaatgcttttatggtg-tttttttttttgtgaagagacgtttttatggtgtttattggagctcaagggtgggaagagaatgta |
3985677 |
T |
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| Q |
419 |
agatgttattataggggttttggtcggttcttatgg-ttttttgaaggattttttgt-----------acgattggtgtttgaaacttgtgtttgcagtc |
506 |
Q |
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| T |
3985678 |
agatgttattttaggggttttggtcggttcttatggtttttttgaagggtttttggtacgattagcggacgattggtgtttgaaacttgtgtttgcagtc |
3985777 |
T |
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| Q |
507 |
atccatgatgaagtttgaggttctgtctttacttttgatttatgcagttgtgtaaggatttggttttgactttggtggttagtttctattgatttttatg |
606 |
Q |
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| T |
3985778 |
atccatgatgaagtttgaggttctgtctttacttttgatttatgcagttatgtggggatttgg--ttgactttggtggttagtttctattgatttttatg |
3985875 |
T |
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| Q |
607 |
gtagcaattagtttggtggtgtttttattggagttttgatgtgcggagtataaggttttcttttgggtgttatgtctatataatgtgtcttttgttatgt |
706 |
Q |
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| T |
3985876 |
gtagcaattagtttggtggtgtttttattggagttttgatgtgcggagtataaggttttcttttaggtgttatgtctatataatgtgccttttgttatat |
3985975 |
T |
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| Q |
707 |
cgtttatgtattatcggtctctg |
729 |
Q |
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| T |
3985976 |
catttatgtcttatcggtttctg |
3985998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 34105389 - 34105456
Alignment:
| Q |
167 |
gagagttgaggagtgccttattgatttgcttatggagtttggtggggcgatcacttttgctttgagat |
234 |
Q |
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| T |
34105389 |
gagagttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagat |
34105456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 23777735 - 23777653
Alignment:
| Q |
172 |
ttgaggagtgccttattgatttgcttatggagtttggtggggcgatcacttttgctttgagattgagaatcaagttctagact |
254 |
Q |
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| T |
23777735 |
ttgaggggtgccttagttatttgtttatgaagtttggttggtcgatcgcttttgcttcgagatcggaagtcaagttctagact |
23777653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 23144152 - 23144237
Alignment:
| Q |
188 |
tgatttgcttatggagtttggtggggcgatcacttttgctttgagattgagaatcaagttctagactaaagtcaattgggcttgtt |
273 |
Q |
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| T |
23144152 |
tgatttgtttctagagtttggttggacgatctcatttggttcgagattgagagtcaatttctagactaatgtttattgggcttgtt |
23144237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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