View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_30 (Length: 384)
Name: NF19128_low_30
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_30 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 122 - 367
Target Start/End: Original strand, 52970528 - 52970773
Alignment:
| Q |
122 |
taatacattttcctctgagactgaactagtgaaatataggtcacgttttatcataataaggaagtatgcaatttattcaatatcacatcctataaaatat |
221 |
Q |
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| T |
52970528 |
taatacattttcctctgagactgaacaagtgaaatataggtcacgttttattataataaggaagtatgcaatttattctatatcacatcctataaaatat |
52970627 |
T |
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| Q |
222 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaatcacatatatagtctagtattcccagcaaaaca |
321 |
Q |
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| T |
52970628 |
gctacaaaccttgacttgtgatcctacatataactgattatctagtagtggaatctttaggaagaaaccacatatatagtctagtattcccagcaaaaca |
52970727 |
T |
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| Q |
322 |
atattataaaagctgtttgatcatgagaccgtgctacttatcaaag |
367 |
Q |
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| T |
52970728 |
atattataaaagctgtttgatcatgagacagtgctacttatcaaag |
52970773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29822627 - 29822552
Alignment:
| Q |
4 |
cttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatctttctcttcatcttccaacttcatcc |
79 |
Q |
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| T |
29822627 |
cttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttcctctttatcttccaacttcatcc |
29822552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24546941 - 24546863
Alignment:
| Q |
1 |
ttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatctttctcttcatcttccaacttcatcc |
79 |
Q |
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| T |
24546941 |
ttccttatttttctttaatttcttaaaattaaaaatcacaaataatcttcaccttcctcttcatcttccaacttcatcc |
24546863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 28930984 - 28930909
Alignment:
| Q |
5 |
ttatttgtctttaatttcataagattaaaaatcacaaatgatcttca---tctttctcttcatcttccaacttcat |
77 |
Q |
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| T |
28930984 |
ttatttgtctttaatttcttaaaattaaaaatcacaaaaaatcttcatattcttcctcttcatctttcaacttcat |
28930909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 242682 - 242764
Alignment:
| Q |
1 |
ttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatcttt----ctcttcatcttccaacttcatcc |
79 |
Q |
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|||| |||||||||| ||||| ||| |||||||||||| || |||||||||||| |||||||||| |||||||||||| |
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| T |
242682 |
ttccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatctttttccctcttcatctcccaacttcatcc |
242764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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