View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_40 (Length: 331)
Name: NF19128_low_40
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 35780823 - 35780524
Alignment:
| Q |
17 |
tcatcatgacttttcctgtacaaagtcactcaatcctattccgatatcatagtaactttaaataccaaaacacatattagctcaatgtttaattgtgaaa |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35780823 |
tcatcatgacttttcctctacaaagtcactcaatcctattccgatatcatagtaactttaaataccaaaacacatattagctcaatgtttaattgtgaaa |
35780724 |
T |
|
| Q |
117 |
tataccattgacttatgcagaagtagagttatgtgttccaatgtgatgactatcgaatataaaaaacatttgttcacaatttcagtcttctaaaatgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35780723 |
tataccattgacttatgcagaagtagagttatgtgttccaatgtgatgactatcgaatataaaaaacatttgttcacaatttcagtcttctaaaatgctt |
35780624 |
T |
|
| Q |
217 |
gcctatctactttcggatcctaaaatccaaaagaatggggtcttgaacgtatttcatactttcgggagcaaaaatttgaaatgtagtatggtgtttgaga |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35780623 |
gcctatctactttcggatactaaaatccaaaagaatggggtcttgaacgtatttcatactttcgggagcaaaaatttgaaatgtagtgcggtgtttgaga |
35780524 |
T |
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