View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_low_48 (Length: 297)

Name: NF19128_low_48
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_low_48
NF19128_low_48
[»] chr5 (10 HSPs)
chr5 (16-282)||(35025535-35025801)
chr5 (184-282)||(37838568-37838666)
chr5 (191-282)||(37851897-37851988)
chr5 (178-282)||(37833045-37833149)
chr5 (34-124)||(37840960-37841050)
chr5 (207-276)||(37844699-37844768)
chr5 (34-116)||(37835338-37835420)
chr5 (55-124)||(37821416-37821485)
chr5 (55-124)||(37829658-37829727)
chr5 (207-266)||(37846271-37846330)
[»] chr7 (2 HSPs)
chr7 (150-281)||(36867250-36867382)
chr7 (34-124)||(36864102-36864192)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 35025801 - 35025535
Alignment:
Q  16 ataagaaacacttggttaccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025801 ataagaaacacttggttaccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcc 35025702  T
Q  116 tctcatcaatatttccttaagctctctcttccttttggacagtgaccttagtttattgttacttatagagtagtgtgatttgatctgtgagtacaaggat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025701 tctcatcaatatttccttaagctctctcttccttttggacagtgaccttagtttattgttacttatagagtagtgtgatttgatctgtgagtacaaggat 35025602  T
Q  216 ttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattg 282  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  35025601 ttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattg 35025535  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 37838666 - 37838568
Alignment:
Q  184 agtagtgtgatttgatctgtgagtacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattg 282  Q
    |||||||||| |||  |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37838666 agtagtgtgacttgcgctgtgaatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattg 37838568  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 37851988 - 37851897
Alignment:
Q  191 tgatttgatctgtgagtacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattg 282  Q
    ||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  37851988 tgatttggtctgtaagtacaaggacttctgcaggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattg 37851897  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 37833149 - 37833045
Alignment:
Q  178 ttatagagtagtgtgatttgatctgtgagtacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaag 277  Q
    ||||| |||||| ||||||| |||||| || || ||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  37833149 ttatatagtagtatgatttggtctgtgggtccagggatttctgcaggtgtctatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaag 37833050  T
Q  278 tattg 282  Q
    |||||    
T  37833049 tattg 37833045  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 37840960 - 37841050
Alignment:
Q  34 ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcctctcatcaa 124  Q
    ||||||| |||||||||||| | |||| | |||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||    
T  37840960 ccttcttgcatggtggttttgcacttaccactgatgggttgactctgttgtcactcttgactcactggacctttgttcctcctctcatcaa 37841050  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 37844768 - 37844699
Alignment:
Q  207 tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaa 276  Q
    ||||||||||  || |||| | ||||||| ||||||||||| || |||||||||||||||||||||||||    
T  37844768 tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaa 37844699  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 37835338 - 37835420
Alignment:
Q  34 ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcct 116  Q
    ||||||| ||| ||||||| ||||||| ||||||||||||||   | ||||||||| ||||||||||||| ||| | ||||||    
T  37835338 ccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggacttttattcctcct 37835420  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 37821416 - 37821485
Alignment:
Q  55 ctcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcctctcatcaa 124  Q
    |||||| ||||||||| ||||||||  |||||||||||||||  ||||||||||| ||||| || |||||    
T  37821416 ctcttacctctgatggtttgactttgatgtcactcttgacacgttggacctttgttcctccgctaatcaa 37821485  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 37829658 - 37829727
Alignment:
Q  55 ctcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcctctcatcaa 124  Q
    |||||| ||||||||| ||||||||  |||||||||||||||  ||||||||||| ||||| || |||||    
T  37829658 ctcttacctctgatggtttgactttgatgtcactcttgacacgttggacctttgttcctccgctaatcaa 37829727  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 37846330 - 37846271
Alignment:
Q  207 tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccaattgaaa 266  Q
    |||||||||||||   ||||| |||||||||||||  |||| ||||||||||||||||||    
T  37846330 tacaaggatttcttttggtacatatattgaccccactgtgagaggaaaaaccaattgaaa 37846271  T

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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 36867382 - 36867250
Alignment:
Q  150 ttggacagtgaccttagttt-attgttacttatagagtagtgtgatttgatctgtgagtacaaggatttctgcaggtacctatattgaccccaacgtgat 248  Q
    |||||||||||||| ||||| ||   |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36867382 ttggacagtgacctcagtttgatccgtacttatagagtagggtgatttgatctttgagtacaaggatttctgcaggtacctatattgaccccaacgtgat 36867283  T
Q  249 aggaaaaaccaattgaaaggtttggtaagtatt 281  Q
    ||||||||||| |||||||||||| ||||||||    
T  36867282 aggaaaaaccagttgaaaggtttgataagtatt 36867250  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 36864102 - 36864192
Alignment:
Q  34 ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggacctttgtacctcctctcatcaa 124  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  36864102 ccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttgttcctcctctcatcaa 36864192  T

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