View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_54 (Length: 251)
Name: NF19128_low_54
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 50508802 - 50508563
Alignment:
| Q |
1 |
aagagaatttcaaattagtaaattgtgattattgtcgtaactactataccactaagcggagtcggctacatgattaaacaccgtcataatgttaaaacat |
100 |
Q |
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| T |
50508802 |
aagagaatttcaaattagtaaattgtgattattgtcgtaactactataccactaagcggagtcggctacataattaaacaccatcataatgttaaaacat |
50508703 |
T |
|
| Q |
101 |
attaaaatgtttttaattcaatgtagagaatttgcttacggaagttattgagaaacaacatctaaaaatgctgtttcccccaagatgtttactagagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50508702 |
attaaaatgtttttaattcaatgtagagaatttgcttacggaagttattgagaaacaacatctaaaaatgctgtttcccccaagatgtttactagagtta |
50508603 |
T |
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| Q |
201 |
ttatttatggttttgttggcttttaggatttattcttcat |
240 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
50508602 |
ttatttagggttttgttggcttttaggatttattcttcat |
50508563 |
T |
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