View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_low_56 (Length: 248)
Name: NF19128_low_56
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 13892360 - 13892581
Alignment:
| Q |
16 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacagt |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13892360 |
gttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaatatgccaactgtatttctgttatgacagt |
13892459 |
T |
|
| Q |
116 |
tagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcatt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13892460 |
tagatgagttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgcacattgtaacagattcattcatt |
13892559 |
T |
|
| Q |
216 |
cgataatacatttttctccttt |
237 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
13892560 |
caataatacatttttctccttt |
13892581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 13887703 - 13887925
Alignment:
| Q |
16 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgac-ag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||||||| || |
|
|
| T |
13887703 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaacatgccagctgtatttctgttatgaccag |
13887802 |
T |
|
| Q |
115 |
ttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcat |
214 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887803 |
ttagaggagttgtgttactatttagttagtgtatgatggatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcat |
13887902 |
T |
|
| Q |
215 |
tcgataatacatttttctccttt |
237 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
13887903 |
tcgataatacatttttccccttt |
13887925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 27816211 - 27816420
Alignment:
| Q |
16 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaat-atgccaactgtatttctgttatgacag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| || |||||| |||| |||||||| |||||| |
|
|
| T |
27816211 |
gttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgacag |
27816309 |
T |
|
| Q |
115 |
ttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcat |
214 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
27816310 |
ttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatagatgcttacacattgtaactaattcattcaa |
27816409 |
T |
|
| Q |
215 |
tcgataataca |
225 |
Q |
| |
|
|| |||||||| |
|
|
| T |
27816410 |
tcaataataca |
27816420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 12147438 - 12147358
Alignment:
| Q |
141 |
tagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcattcgataa |
221 |
Q |
| |
|
|||| |||||||| || ||||||| |||| ||||||||||||| || | || |||||||||| | |||||||||| |||| |
|
|
| T |
12147438 |
tagtatatgatagctacaatgtacactcaatagcttataaataagtacatgctcattgtaacaaactcattcattcaataa |
12147358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 15094698 - 15094893
Alignment:
| Q |
16 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||||| ||||||| ||||||| |
|
|
| T |
15094698 |
gttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccaactgtaattctgtt-tgacagt |
15094796 |
T |
|
| Q |
116 |
tagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattc |
212 |
Q |
| |
|
|||| | | ||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
15094797 |
tagagtaatagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcattc |
15094893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 18291735 - 18291879
Alignment:
| Q |
16 |
gttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacagt |
115 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||| | || |||| ||||||||||||| ||||||| |
|
|
| T |
18291735 |
gttacaaaataaaga---agatgaagttacttgtgatgcaagtaacttgagcaaaccctaacaaactgtactaggccagctgtatttctgttgtgacagt |
18291831 |
T |
|
| Q |
116 |
tagatgag-ttgtgttactatgcagttagtgtatgatagatataatgt |
162 |
Q |
| |
|
|||| || | |||||||| || |||||| ||||||||||||||||| |
|
|
| T |
18291832 |
tagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University