View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_58 (Length: 246)
Name: NF19128_low_58
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5298129 - 5298359
Alignment:
| Q |
1 |
ctagttagctaagaaagtgcccaattttaggccaaacaccctttgcgtgtaagagagaaaagttaataaaggtatagtatacccttattgtgttcatact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5298129 |
ctagttagctaagaaagtgcccaattttaggccaaataccctttgcgtgtaagagagaaaagttaattaaggtatagtatacccttattgtgttcatact |
5298228 |
T |
|
| Q |
101 |
agaacgtttattctcatggtaattaactggtgattaagctaactatagtactataccatgcttaatgcgtggactttgaatttgatgcaactttttggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5298229 |
agaacgtttattctcatggtaattaactggtgattaagctaactatagtactataccatgcttaatgcgtggactttgaatttgatgcaactttttggat |
5298328 |
T |
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| Q |
201 |
gcgcacgttttctaattctagttaattccta |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5298329 |
gcgcacgttttctaattctagttaattccta |
5298359 |
T |
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