View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19128_low_59 (Length: 243)
Name: NF19128_low_59
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_59 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 6258488 - 6258259
Alignment:
| Q |
11 |
atcatcacttatggatatacaactatatataagaggtttagttaatccagtaaataaattataatgcaatactgaaggataacagttaaatacttacatg |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6258488 |
atcatcacttatggatagacaactatatataagaggtttagttaatccagtaaataaattataatgcaatactgaaggataacagttaaatacttacatg |
6258389 |
T |
|
| Q |
111 |
tatgtagattttggatacaaatttggaaatgaatgtaacatttttattgnnnnnnnagatagacaaatgaaaaacgttgaggtttgaactctgattatga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6258388 |
tatgtagattttggatacaaatttggaaatgaatgtaacatttttttattttttttagatagacaaatgaaaaacgttgaggtttgaactccgattatga |
6258289 |
T |
|
| Q |
211 |
tgttcaatctaacgatttcgacatttttac |
240 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |
|
|
| T |
6258288 |
tgttcgatctaacgatttcgatatttttac |
6258259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 6252078 - 6251940
Alignment:
| Q |
11 |
atcatcacttatggatatacaactatatataagaggtttagttaatccagtaaataaattataatgcaatactgaaggataacagttaaatacttacatg |
110 |
Q |
| |
|
|||||||| |||||||| ||||||| || |||||||| | ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6252078 |
atcatcacatatggatagacaactacatggaagaggttgaattaatccagtacataaatcataatgcaataccgaaggataacagttaaatacttacatg |
6251979 |
T |
|
| Q |
111 |
tatgtagattttg-gatacaaatttggaaatgaatgtaa |
148 |
Q |
| |
|
| ||||||||||| | || |||| |||||||||||||| |
|
|
| T |
6251978 |
tgtgtagattttgcaaaaccaattcggaaatgaatgtaa |
6251940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 6246865 - 6246728
Alignment:
| Q |
11 |
atcatcacttatggatatacaactatatataagaggtttagttaatccagtaaataaattataatgcaatactgaaggataacagttaaatacttacatg |
110 |
Q |
| |
|
|||||||| |||||||| ||| ||| ||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
6246865 |
atcatcacatatggatagacatctacatacaagaggtttaattaatccagtacataaattataatgcaatactggaggataatagttatttaattacaat |
6246766 |
T |
|
| Q |
111 |
tatgtagattttggatacaaatttggaaatgaatgtaa |
148 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
6246765 |
tgtggagattttggataccaatttggaaatgaatgtaa |
6246728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 6238087 - 6237954
Alignment:
| Q |
11 |
atcatcacttatggatatacaactatatataagaggtttagttaatccagtaaataaattataatgcaatactgaaggataacagttaaatacttacatg |
110 |
Q |
| |
|
|||||||| ||| || ||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||| ||||||| |||| | | ||||| | |
|
|
| T |
6238087 |
atcatcacatatcgacatacaactacatataagaggtttaattaatccagtccataaattataatccaatactagaggataagggttataaaattacacg |
6237988 |
T |
|
| Q |
111 |
tatgtagattttggatacaaatttggaaatgaat |
144 |
Q |
| |
|
| |||||||||||||||| |||||| |||||||| |
|
|
| T |
6237987 |
tgtgtagattttggataccaatttgaaaatgaat |
6237954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 6233130 - 6233084
Alignment:
| Q |
11 |
atcatcacttatggatatacaactatatataagaggtttagttaatc |
57 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
6233130 |
atcatcacatatggataaacaactacatataagaggtttaattaatc |
6233084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 396192 - 396248
Alignment:
| Q |
186 |
gttgaggtttgaactctgattatgatgttcaatctaacgatttcgacatttttacca |
242 |
Q |
| |
|
||||||||| |||||||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
396192 |
gttgaggttcgaactctgatcacaatgttcgatctaacaatttcgacatttttacca |
396248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 7267877 - 7267929
Alignment:
| Q |
186 |
gttgaggtttgaactctgattatgatgttcaatctaacgatttcgacattttt |
238 |
Q |
| |
|
||||||||||||||||| || ||||||| ||| ||||| |||||||||||||| |
|
|
| T |
7267877 |
gttgaggtttgaactctaatcatgatgtccaaactaacaatttcgacattttt |
7267929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University