View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19128_low_6 (Length: 660)
Name: NF19128_low_6
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19128_low_6 |
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| [»] scaffold0878 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 31329852 - 31329211
Alignment:
| Q |
1 |
aaaatgaaacaaatcagatttataacattataatactatacaaatcttagaacatataaataatacaacacaaatcttagaacataaataaatacaannn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329852 |
aaaatgaaacaaatcagatttataacattataatattatacaaatcttagaacatataaataatacaacacaaatcttagaacataaataaatacaattt |
31329753 |
T |
|
| Q |
101 |
nnnnncaaacaaatctgatacacaatctcatttataagatctaannnnnnncatcatccttttataaccaaaccgattaattaataaattgagattcaga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329752 |
tttttcaaacaaatctgatacacaatctcatttataagatctaatttttttcatcatccttttataaccaaaccgattaattaataaattgagattcaga |
31329653 |
T |
|
| Q |
201 |
ttataactannnnnnnngtgcatccatcttcagaaatcaacacacatatttcaatttacgcatgcattatataattttacaatactaaaccattaattct |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329652 |
ttataactattttttttgtgcatccatcttcagaaatcaacacacatatttcaatttacgcatgcattatataattttacaatactaaaccattaattct |
31329553 |
T |
|
| Q |
301 |
cgattaaattagtcaatattatataattcatcaattaatcttattcttaacgtggatctggaaaatttcacacctttccattctaagcgaaggcctcaaa |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31329552 |
cgattaaattagtcaatatcatataattcatcaattaatcttattcttaacgtggatctggaaaatttcacacctttccattctaagcgaaagcctcaaa |
31329453 |
T |
|
| Q |
401 |
attccaggacatttctgcagcatcgatgcaacaaatccaacatgaaccttcaacggaaccctgagcttcaactcctccgtcgctctccacagcttcctcg |
500 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
31329452 |
atcccaggacatttctgcagcatcgatgcaacaaatccaacatgaaccttcaccggaaccctaagcttcaactcctccgtcgctttccacagcttcctcg |
31329353 |
T |
|
| Q |
501 |
ccgtctccctccatcccttacaccccttcgccgccgataacaatcccgccggcggtaacctcctcaaaacctcccaccgtaaattcccaggcaaaccgct |
600 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
31329352 |
ccgtctccctccatcccttacacaccttcgccgccgataacaatcccgccggcggtaacctcctcaaaacatcccaccttaaattcccaggcaaaccgct |
31329253 |
T |
|
| Q |
601 |
cgaatcaatctccacatctagatctggttctagatctagttc |
642 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329252 |
cgaatcaatctccacatctagatctggttctagatctagttc |
31329211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 186 - 642
Target Start/End: Complemental strand, 27892122 - 27891668
Alignment:
| Q |
186 |
aaattgagattcagattataactannnnnnnngtgcatccatcttcagaaatcaacacacatatttcaatttacgcatgcattatataattttacaatac |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27892122 |
aaattgagattcagattataactattttttt-gtgcatccatcttcagaaatcaacacacatatttcaatttacgcatgcattatataattttacaatac |
27892024 |
T |
|
| Q |
286 |
taaaccattaattctcgattaaattagtcaatattatataattcatcaattaatcttattcttaacgtggatctggaaaatttcacacctttccattcta |
385 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
27892023 |
taaaccattaattctcgattaaattaatcaatattatataattcatca-ttaatcttattgttaacgtggatctggaaaatttcatacctttccattcta |
27891925 |
T |
|
| Q |
386 |
agcgaaggcctcaaaattccaggacatttctgcagcatcgatgcaacaaatccaacatgaaccttcaacggaaccctgagcttcaactcctccgtcgctc |
485 |
Q |
| |
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|||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
27891924 |
agcgaaagcctcaaaatcccaagacatttatgcagcatcgatgcaacaaatccaacatgaaccttcaccggaaccctaagcttcaactcctccgtcgctt |
27891825 |
T |
|
| Q |
486 |
tccacagcttcctcgccgtctccctccatcccttacaccccttcgccgccgataacaatcccgccggcggtaacctcctcaaaacctcccaccgtaaatt |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
27891824 |
tccacagcttcctcgccgtctccctccatcccttacacaccttcgccgccgataacgatcccgccggcggtaacctcctcaaaagcttccaccgtaaatt |
27891725 |
T |
|
| Q |
586 |
cccaggcaaaccgctcgaatcaatctccacatctagatctggttctagatctagttc |
642 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27891724 |
cccaggaaaaccgctcgaatcaatctccacatctagatctggttctcgatcgagttc |
27891668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0878 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0878
Description:
Target: scaffold0878; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 186 - 642
Target Start/End: Complemental strand, 2810 - 2355
Alignment:
| Q |
186 |
aaattgagattcagattataactannnnnnnngtgcatccatcttcagaaatcaacacacatatttcaatttacgcatgcattatataattttacaatac |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2810 |
aaattgagattcagattataactattttttt-gtgcatccatcttcagaaatcaacacacatatttcaatttgaccatgcattatataattttacaatac |
2712 |
T |
|
| Q |
286 |
taaaccattaattctcgattaaattagtcaatattatataattcatcaattaatcttattcttaacgtggatctggaaaatttcacacctttccattcta |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
2711 |
taaaccattaattctcgattaaattagtcaatattatataattcatcaattaatcttattgttaatgtggatctggaaaatttcacacctttccattcta |
2612 |
T |
|
| Q |
386 |
agcgaaggcctcaaaattccaggacatttctgcagcatcgatgcaacaaatccaacatgaaccttcaacggaaccctgagcttcaactcctccgtcgctc |
485 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| || || |
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| T |
2611 |
agcgaaagcctcaaaatcccatgacatttctgcagcatcgatacaacaaatccaacatgaaccttcaccggaaccctaagcttcaactcctccatctctt |
2512 |
T |
|
| Q |
486 |
tccacagcttcctcgccgtctccctccatcccttacaccccttcgccgccgataacaatcccgccggcggtaacctcctcaaaacctcccaccgtaaatt |
585 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2511 |
tccacaggttcctcgccgtctccctccatcccttacacaccttcaccgccgataacgatcccgccggcggtaacctcctcaaaacctcccacggtaaatc |
2412 |
T |
|
| Q |
586 |
cccaggcaaaccgctcgaatcaatctccacatctagatctggttctagatctagttc |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2411 |
cccaggcaaaccgctcgaatcaatctccacatctagatctggttctagatctagttc |
2355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 494 - 566
Target Start/End: Original strand, 15115622 - 15115694
Alignment:
| Q |
494 |
ttcctcgccgtctccctccatcccttacaccccttcgccgccgataacaatcccgccggcggtaacctcctca |
566 |
Q |
| |
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||||||| ||||||| |||||||||||||| ||||||||||| | ||||||| |||||| ||||||||||||| |
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| T |
15115622 |
ttcctcgtcgtctccttccatcccttacacaccttcgccgcccacaacaatctcgccggtggtaacctcctca |
15115694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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