View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19128_low_65 (Length: 230)

Name: NF19128_low_65
Description: NF19128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19128_low_65
NF19128_low_65
[»] chr6 (3 HSPs)
chr6 (16-210)||(6257848-6258042)
chr6 (141-199)||(6232724-6232782)
chr6 (15-109)||(25050979-25051074)
[»] chr4 (6 HSPs)
chr4 (15-110)||(8818642-8818738)
chr4 (15-109)||(18812560-18812655)
chr4 (141-208)||(25203238-25203305)
chr4 (30-91)||(25843551-25843612)
chr4 (15-109)||(10032577-10032672)
chr4 (16-54)||(8678700-8678738)
[»] scaffold0245 (2 HSPs)
scaffold0245 (15-109)||(11211-11306)
scaffold0245 (20-109)||(9589-9679)
[»] chr3 (5 HSPs)
chr3 (20-91)||(43652754-43652825)
chr3 (19-110)||(43819835-43819929)
chr3 (15-107)||(34143065-34143158)
chr3 (170-199)||(41874418-41874447)
chr3 (15-110)||(548207-548303)
[»] chr1 (3 HSPs)
chr1 (15-109)||(1284944-1285039)
chr1 (169-210)||(13045575-13045616)
chr1 (170-199)||(33773109-33773138)
[»] chr5 (2 HSPs)
chr5 (15-105)||(4897321-4897412)
chr5 (22-90)||(29094250-29094318)
[»] scaffold0229 (1 HSPs)
scaffold0229 (20-109)||(9917-10007)
[»] chr2 (2 HSPs)
chr2 (170-199)||(25306723-25306752)
chr2 (170-199)||(41602368-41602397)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 6258042 - 6257848
Alignment:
Q  16 agatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattgattagattgaaaaagataatggaaa 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6258042 agatgaagatgaatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattgattagattgaaagagataatggaaa 6257943  T
Q  116 tgatatggtgagtcttcctatatacatatagagattagttggagtaaataattctaaccaaacttctcaaacactctaactaaccataatgtaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6257942 tgatatggtgagtcttcctatatacatatagagattagttggagtaaataactctaaccaaacttctcaaacactctaactaaccataatgtaat 6257848  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 6232782 - 6232724
Alignment:
Q  141 atatagagattagttggagtaaataattctaaccaaacttctcaaacactctaactaac 199  Q
    ||||| |||||||||| ||||| ||| ||||||||||||| | ||||||||||||||||    
T  6232782 atataaagattagttgaagtaactaactctaaccaaactttttaaacactctaactaac 6232724  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 25051074 - 25050979
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    |||||||||||| | |||||||||||||||||| | | || | || ||||||||||| || || |  ||||||||| |||| ||||||||||||||    
T  25051074 gagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaaaggaataatctttgtaattcatattgaattaaattgaaaaagataa 25050979  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 8818642 - 8818738
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataat 110  Q
    |||||||||||| | || ||||||||||||||| ||| || |||||||||||||||| |||||||| || |||||| ||||||| ||||| ||||||    
T  8818642 gagatgaagatgaagtttataggagaagtaggcatgagagattgatacaaaggaataatccttatgatttatattgaattagatagaaaaggataat 8818738  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 18812560 - 18812655
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    |||||||||||| | |||||||||||||||||| ||| || | || ||||| ||||| ||||| |  ||||||||| |||||||||||||||||||    
T  18812560 gagatgaagatgaagttcataggagaagtaggcatgagaggtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataa 18812655  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 25203238 - 25203305
Alignment:
Q  141 atatagagattagttggagtaaataattctaaccaaacttctcaaacactctaactaaccataatgta 208  Q
    ||||||||||||||| |||||| || |||||||||||||| ||||||| |||||||||| ||| ||||    
T  25203238 atatagagattagttagagtaattatttctaaccaaacttttcaaacattctaactaactatagtgta 25203305  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 25843612 - 25843551
Alignment:
Q  30 ttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattga 91  Q
    ||||||||||| ||| ||||||||| | || ||||||||||| |||||||||||||||||||    
T  25843612 ttcataggagaggtaagcttgataggtagaaacaaaggaataatccttatgtttcatattga 25843551  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 10032577 - 10032672
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    |||||||||||| | |||||||||||||||||| | | || | || ||||||||||| ||||| |  ||||||||| |||||| ||||||||||||    
T  10032577 gagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaaaggaatagtccttgtaattcatattgaattagaatgaaaaagataa 10032672  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 8678738 - 8678700
Alignment:
Q  16 agatgaagatggatttcataggagaagtaggcttgatag 54  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  8678738 agatgaagatgaaattcataggagaagtaggcttgatag 8678700  T

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Target: scaffold0245 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 11306 - 11211
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    |||||||||||| | |||||||||||||||||| | | || | || ||||||||||| ||||| |  ||||||||| |||||||||||||||||||    
T  11306 gagatgaagatgaagttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataa 11211  T

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Target: scaffold0245; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 9679 - 9589
Alignment:
Q  20 gaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    ||||||| | |||||||||||||||||| | | || | || ||| ||||||| ||||| |  ||||||||| |||||||||||||||||||    
T  9679 gaagatgaagttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataa 9589  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 43652825 - 43652754
Alignment:
Q  20 gaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattga 91  Q
    ||||||| | ||||||||| | ||||| ||||||| |||||||||||||| |||||| ||||||||||||||    
T  43652825 gaagatgaacttcataggaaaggtaggtttgataggttgatacaaaggaaaactcctaatgtttcatattga 43652754  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 43819835 - 43819929
Alignment:
Q  19 tgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattga---ttagattgaaaaagataat 110  Q
    |||||||| |||||||| |||||||| | ||||||  |||||||||| ||||| |||||||  ||||||||||   ||||| |||||||||||||    
T  43819835 tgaagatgaatttcataagagaagtatgattgataagttgatacaaaagaataatccttataattcatattgaaaattagaatgaaaaagataat 43819929  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 34143158 - 34143065
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagat 107  Q
    ||||||||| || | |||||||||||||||||| | | || | || ||||||||||| ||||| |  ||||||||| |||||||||||||||||    
T  34143158 gagatgaaggtgaagttcataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 34143065  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 41874447 - 41874418
Alignment:
Q  170 taaccaaacttctcaaacactctaactaac 199  Q
    ||||||||||||||||||||||||||||||    
T  41874447 taaccaaacttctcaaacactctaactaac 41874418  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 548303 - 548207
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataat 110  Q
    |||||||||||| | |||||||||||||| | | | | || | || ||||||||||| ||||| |  ||||||||| |||||| |||||||||||||    
T  548303 gagatgaagatgaacttcataggagaagtggacattagagatagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagataat 548207  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 1285039 - 1284944
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    |||||||||||| | |||||||||||||||||| | | || | || ||||||||||| ||||| |  ||||||||| |||||||||||||||||||    
T  1285039 gagatgaagatgaagttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataa 1284944  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 13045616 - 13045575
Alignment:
Q  169 ctaaccaaacttctcaaacactctaactaaccataatgtaat 210  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  13045616 ctaaccaaacttctcaaacactcttactaactatagtgtaat 13045575  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 33773138 - 33773109
Alignment:
Q  170 taaccaaacttctcaaacactctaactaac 199  Q
    ||||||||||||||||||||||||||||||    
T  33773138 taaccaaacttctcaaacactctaactaac 33773109  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 4897321 - 4897412
Alignment:
Q  15 gagatgaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaag 105  Q
    |||||||||||| | |||||||||||||||||| | | || | || ||||||||||| ||||| |  ||||||||| |||||| ||||||||    
T  4897321 gagatgaagatgaacttcataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaag 4897412  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 29094318 - 29094250
Alignment:
Q  22 agatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg 90  Q
    ||||| |||| ||||||||| |||| ||||||  |||||||||||||||| |  || ||||||||||||    
T  29094318 agatgaattttataggagaaataggtttgataagttgatacaaaggaataattattgtgtttcatattg 29094250  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 10007 - 9917
Alignment:
Q  20 gaagatggatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaaaagataa 109  Q
    ||||||| | |||||||||||||||||| | | || | || ||| ||||||| ||||| |  ||||||||| |||||||||||||||||||    
T  10007 gaagatgaagttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataa 9917  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 25306752 - 25306723
Alignment:
Q  170 taaccaaacttctcaaacactctaactaac 199  Q
    ||||||||||||||||||||||||||||||    
T  25306752 taaccaaacttctcaaacactctaactaac 25306723  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 41602397 - 41602368
Alignment:
Q  170 taaccaaacttctcaaacactctaactaac 199  Q
    ||||||||||||||||||||||||||||||    
T  41602397 taaccaaacttctcaaacactctaactaac 41602368  T

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