View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19129_high_5 (Length: 461)

Name: NF19129_high_5
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19129_high_5
NF19129_high_5
[»] chr8 (10 HSPs)
chr8 (13-256)||(15305565-15305807)
chr8 (13-256)||(15485934-15486176)
chr8 (263-444)||(15308351-15308552)
chr8 (263-444)||(15488720-15488921)
chr8 (29-137)||(10738268-10738372)
chr8 (73-128)||(17909143-17909198)
chr8 (19-139)||(30714966-30715082)
chr8 (73-120)||(8509281-8509328)
chr8 (16-100)||(32631769-32631849)
chr8 (73-114)||(28349136-28349177)
[»] chr3 (9 HSPs)
chr3 (12-164)||(26830237-26830384)
chr3 (29-131)||(9725459-9725557)
chr3 (29-131)||(23343662-23343760)
chr3 (19-103)||(21882753-21882833)
chr3 (19-139)||(49487474-49487590)
chr3 (29-131)||(13990118-13990216)
chr3 (70-131)||(52933243-52933304)
chr3 (78-137)||(13925825-13925884)
chr3 (73-131)||(2169466-2169524)
[»] chr4 (9 HSPs)
chr4 (20-154)||(26081893-26082022)
chr4 (20-137)||(13999261-13999375)
chr4 (28-131)||(22748288-22748387)
chr4 (29-131)||(20193368-20193466)
chr4 (29-131)||(53981379-53981477)
chr4 (19-139)||(12659936-12660052)
chr4 (73-128)||(12747368-12747423)
chr4 (19-139)||(16326464-16326580)
chr4 (29-131)||(26996472-26996570)
[»] chr6 (5 HSPs)
chr6 (29-129)||(19441861-19441957)
chr6 (31-131)||(14851928-14852024)
chr6 (73-128)||(17270894-17270949)
chr6 (28-137)||(25395011-25395116)
chr6 (29-137)||(6932322-6932426)
[»] chr2 (18 HSPs)
chr2 (70-137)||(16444156-16444223)
chr2 (29-131)||(1525018-1525116)
chr2 (29-131)||(7910738-7910836)
chr2 (31-137)||(19911571-19911673)
chr2 (29-131)||(22429632-22429730)
chr2 (29-131)||(22435226-22435324)
chr2 (29-131)||(43776276-43776374)
chr2 (73-137)||(11311352-11311416)
chr2 (19-139)||(19438286-19438402)
chr2 (73-128)||(21290268-21290323)
chr2 (74-137)||(25231285-25231348)
chr2 (19-139)||(25445808-25445924)
chr2 (19-139)||(43288139-43288255)
chr2 (73-131)||(19088775-19088833)
chr2 (29-131)||(635568-635666)
chr2 (29-131)||(14898069-14898167)
chr2 (19-64)||(5836826-5836871)
chr2 (70-131)||(17320360-17320421)
[»] scaffold0461 (1 HSPs)
scaffold0461 (29-131)||(13364-13462)
[»] scaffold0004 (1 HSPs)
scaffold0004 (29-131)||(346448-346546)
[»] chr7 (8 HSPs)
chr7 (29-131)||(571461-571559)
chr7 (29-131)||(16647709-16647807)
chr7 (29-131)||(25498339-25498437)
chr7 (29-131)||(32147764-32147862)
chr7 (29-131)||(42208192-42208290)
chr7 (73-137)||(7562494-7562558)
chr7 (19-103)||(341043-341123)
chr7 (29-131)||(17622070-17622168)
[»] chr1 (7 HSPs)
chr1 (29-131)||(15715908-15716006)
chr1 (29-131)||(33493711-33493809)
chr1 (73-137)||(15552159-15552223)
chr1 (19-72)||(11659534-11659587)
chr1 (28-129)||(26028036-26028133)
chr1 (78-163)||(27164009-27164094)
chr1 (74-131)||(40275045-40275102)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-139)||(111168-111284)
[»] chr5 (7 HSPs)
chr5 (19-139)||(16672802-16672918)
chr5 (73-128)||(17945151-17945206)
chr5 (19-139)||(21171936-21172052)
chr5 (19-139)||(23054127-23054243)
chr5 (73-131)||(1532481-1532539)
chr5 (29-131)||(28367758-28367856)
chr5 (29-131)||(30958299-30958397)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 15305565 - 15305807
Alignment:
Q  13 tgaatagtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacat 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15305565 tgaatagtacttcagaatcaatttaagttgttcatcattttcacgacgacataatatatatttacccacatgaagtgacatcacaatcattttagtacat 15305664  T
Q  113 aaccaacttgatttgtccacatcaaattattttaacacattttcaatataagnnnnnnnnnnnaaagccaaaataaattatattacaaccaaaagcattt 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  15305665 aaccaactggatttgtccacatcaaattattttaacacattttcaatataag-ttttttttttaaagccaaaataaattatattacaaccaaaagcattt 15305763  T
Q  213 tgtgtcacatattactatactacatatcactagaaatgcaggtt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15305764 tgtgtcacatattactatactacatatcactagaaatgcaggtt 15305807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 15485934 - 15486176
Alignment:
Q  13 tgaatagtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacat 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15485934 tgaatagtacttcagaatcaatttaagttgttcatcattttcacgacgacataatatatatttacccacatgaagtgacatcacaatcattttagtacat 15486033  T
Q  113 aaccaacttgatttgtccacatcaaattattttaacacattttcaatataagnnnnnnnnnnnaaagccaaaataaattatattacaaccaaaagcattt 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  15486034 aaccaactggatttgtccacatcaaattattttaacacattttcaatataag-ttttttttttaaagccaaaataaattatattacaaccaaaagcattt 15486132  T
Q  213 tgtgtcacatattactatactacatatcactagaaatgcaggtt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15486133 tgtgtcacatattactatactacatatcactagaaatgcaggtt 15486176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 263 - 444
Target Start/End: Original strand, 15308351 - 15308552
Alignment:
Q  263 attgttattgtattaaaattggttcaacaatttaccttggatgcattgttgtattgaacaggattcctacaagagataatttattgcggcgacgagtgat 362  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  15308351 attgttattgtattaaaattggttcacaaatttaccttggatgcattattgtattgaacaggattcctacaagagataatttattgcggcatcaagtgat 15308450  T
Q  363 -agcaccgaatga-------------------tgcttgatgaataagtgttgatcatcgtttttggagttgttcggtcttcgatggtctccagtattggt 442  Q
     |||||| |||||                   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15308451 aagcaccaaatgatattcattattcgggtgggtgcttgatgaataagtgttgatcatcgtttttggagctgttcggtcttcgatggtctccagtattggt 15308550  T
Q  443 tc 444  Q
    ||    
T  15308551 tc 15308552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 263 - 444
Target Start/End: Original strand, 15488720 - 15488921
Alignment:
Q  263 attgttattgtattaaaattggttcaacaatttaccttggatgcattgttgtattgaacaggattcctacaagagataatttattgcggcgacgagtgat 362  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  15488720 attgttattgtattaaaattggttcacaaatttaccttggatgcattattgtattgaacaggattcctacaagagataatttattgcggcatcaagtgat 15488819  T
Q  363 -agcaccgaatga-------------------tgcttgatgaataagtgttgatcatcgtttttggagttgttcggtcttcgatggtctccagtattggt 442  Q
     |||||| |||||                   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15488820 aagcaccaaatgatattcattattcgggtgggtgcttgatgaataagtgttgatcatcgtttttggagctgttcggtcttcgatggtctccagtattggt 15488919  T
Q  443 tc 444  Q
    ||    
T  15488920 tc 15488921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 10738372 - 10738268
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| ||||||||||| |||||||||| ||||| || |    |||||||||| ||||||||| ||||||||| ||||| |||| ||| | |||||||    
T  10738372 accaattcaagttgttcataattttcttgaggacatgatct----ttactcacatcaagtgacatgacaatcattctaatatataatcaattagatttgt 10738277  T
Q  129 ccacatcaa 137  Q
    ||| |||||    
T  10738276 ccatatcaa 10738268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 17909198 - 17909143
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||    
T  17909198 tttactcacatcaagtgacatcacaatcattatattacataatcaactagatttgt 17909143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 30714966 - 30715082
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  30714966 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 30715061  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  30715062 ctagatgtgtccatatcaaat 30715082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 8509328 - 8509281
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaact 120  Q
    ||||||||||| ||||||||||||||||||| || ||||||| |||||    
T  8509328 tttactcacatcaagtgacatcacaatcattctattacataatcaact 8509281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 32631849 - 32631769
Alignment:
Q  16 atagtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatc 100  Q
    |||||||||||| | ||||| ||||||||||||||||||||||  ||| |    || |||| |||||| ||||||||||||||||    
T  32631849 atagtacttcaggagcaattcaagttgttcatcattttcttgagtacaca----atgtttattcacatcaagtgacatcacaatc 32631769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 28349136 - 28349177
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataa 114  Q
    ||||||||||| ||||||||||||||||||| || |||||||    
T  28349136 tttactcacatcaagtgacatcacaatcattctattacataa 28349177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 26830384 - 26830237
Alignment:
Q  12 atgaatagtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaataca 111  Q
    |||||| |||||||| |||||| ||||||||||||||||||| |||| |||||    ||| ||||||||||| ||||||||||| ||||||| || ||||    
T  26830384 atgaatggtacttcaaaaccaagttaagttgttcatcatttttttgaggacat----tatctttactcacatcaagtgacatcataatcattctagtaca 26830289  T
Q  112 taaccaacttgatttgtccacatcaaattattttaacacattttcaatataag 164  Q
    ||| ||| | || ||||||| |||||||||||||||||||||||| |||||||    
T  26830288 taatcaaataga-ttgtccatatcaaattattttaacacattttctatataag 26830237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 9725459 - 9725557
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  9725459 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 9725554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 23343760 - 23343662
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  23343760 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 23343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 21882833 - 21882753
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcatt 103  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || |||||||||||||||||||    
T  21882833 gtacttcagaaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcatt 21882753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 49487474 - 49487590
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  49487474 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 49487569  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  49487570 ctagatgtgtccatatcaaat 49487590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 13990216 - 13990118
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | ||| |||    
T  13990216 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatatgt 13990121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 52933243 - 52933304
Alignment:
Q  70 atatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    |||||||||||||| ||||||||||  |||||||||| ||||| | ||||| ||||||||||    
T  52933243 atatttactcacataaagtgacatcttaatcattttagtacatgatcaactagatttgtcca 52933304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 13925884 - 13925825
Alignment:
Q  78 tcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    |||||| ||||||||||||||||||| || ||||||| ||||| ||||||| || |||||    
T  13925884 tcacatcaagtgacatcacaatcattctattacataatcaactagatttgttcatatcaa 13925825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 2169466 - 2169524
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| | ||| ||||||    
T  2169466 tttactcacatcaagtgacatcacaatcattctagtacataatcaattagatatgtcca 2169524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 26081893 - 26082022
Alignment:
Q  20 tacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaac 119  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| ||   | |||||||| |  ||||||||||| ||| ||| ||||||||||  |||    
T  26081893 tacttcaggaccaatttaagttgttcatcattttcttgaggacatgat---tttttactcataacaagtgacatcataattattctaatacataataaac 26081989  T
Q  120 ttgatttgtccacatcaaattattttaacacattt 154  Q
    |  |||  ||||||||||| |||||||||||||||    
T  26081990 taaatt--tccacatcaaagtattttaacacattt 26082022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 13999375 - 13999261
Alignment:
Q  20 tacttcagaaccaatttaagttgttcatcat-tttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    |||||||| ||||||| || ||||||||||| ||||||||  ||||     |||||||||||||| ||||||||||||||||||| || ||||||| |||    
T  13999375 tacttcaggaccaattcaaattgttcatcatatttcttgagaacat----gatatttactcacatcaagtgacatcacaatcattatattacataatcaa 13999280  T
Q  119 cttgatttgtccacatcaa 137  Q
    || |||||||||| |||||    
T  13999279 ctagatttgtccatatcaa 13999261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 22748387 - 22748288
Alignment:
Q  28 aaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttg 127  Q
    |||||||| ||||||||||| | |||||||| |||||     |||||||||||||| |||||||||||||| |||| |||||||||| ||| | ||||||    
T  22748387 aaccaattcaagttgttcataactttcttgaggacat----gatatttactcacatcaagtgacatcacaaccattctaatacataatcaattagatttg 22748292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 20193368 - 20193466
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  20193368 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 20193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 53981477 - 53981379
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  53981477 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 53981382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 12659936 - 12660052
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  12659936 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 12660031  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  12660032 ctagatgtgtccatatcaaat 12660052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 12747368 - 12747423
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    |||||||| || |||||||||||||||||||||| ||||||| ||||| |||||||    
T  12747368 tttactcatatcaagtgacatcacaatcattttattacataatcaactagatttgt 12747423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 16326464 - 16326580
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  16326464 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 16326559  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  16326560 ctagatgtgtccatatcaaat 16326580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 26996570 - 26996472
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| ||||||||||| |||||||||| ||||| ||      |||||||||| ||| ||||||||||||||| || ||||||| ||| | |||||||    
T  26996570 accaattcaagttgttcataattttcttgaggacatgatcc----ttactcacatcaagcgacatcacaatcattctagtacataatcaattagatttgt 26996475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 19441861 - 19441957
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| |||| |||||| |||||||||| |||||||| |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  19441861 accaattcaagtagttcataattttcttgaggacataattt----ttactcacatcaagtgacatcacaatcattctattacataatcaattagatttgt 19441956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 14852024 - 14851928
Alignment:
Q  31 caatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcc 130  Q
    ||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||||    
T  14852024 caattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgtcc 14851929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 17270894 - 17270949
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||    
T  17270894 tttactcacatcaagtgacatcacaatcattatattacataatcaactagatttgt 17270949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 25395116 - 25395011
Alignment:
Q  28 aaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttg 127  Q
    |||||||| ||||||||||| | |||||||| ||||| || |    |||||||||| ||||||||| |||| |||| |||||||||| ||  | ||||||    
T  25395116 aaccaattcaagttgttcataactttcttgaggacatgatct----ttactcacatcaagtgacatgacaaacattctaatacataatcatttagatttg 25395021  T
Q  128 tccacatcaa 137  Q
    |||| |||||    
T  25395020 tccatatcaa 25395011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 6932426 - 6932322
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    |||||||||||||||| || |||||| ||| ||| |    ||| ||||||||||| || |||||||||||||||| || ||||||| ||| | |||||||    
T  6932426 accaatttaagttgtttataattttcctgaagacgt----tatctttactcacatcaaatgacatcacaatcattctagtacataatcaattagatttgt 6932331  T
Q  129 ccacatcaa 137  Q
     || |||||    
T  6932330 tcatatcaa 6932322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 16444156 - 16444223
Alignment:
Q  70 atatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    |||||||||||||| ||||||||||||||||||| || ||||||| |||||  ||||||||| |||||    
T  16444156 atatttactcacatcaagtgacatcacaatcattatattacataatcaactaaatttgtccatatcaa 16444223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 1525116 - 1525018
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  1525116 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 1525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 7910738 - 7910836
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  7910738 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 7910833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 19911673 - 19911571
Alignment:
Q  31 caatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcc 130  Q
    ||||| ||| |||||||||||||||||| ||| | || |    |||||||||| ||||||||||||||||||| || ||||||| ||||| ||||||| |    
T  19911673 caattcaagatgttcatcattttcttgaggacgtgatct----ttactcacatcaagtgacatcacaatcattctattacataatcaactagatttgttc 19911578  T
Q  131 acatcaa 137  Q
    | |||||    
T  19911577 atatcaa 19911571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 22429730 - 22429632
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  22429730 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 22429635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 22435324 - 22435226
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  22435324 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 22435229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 43776374 - 43776276
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  43776374 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 43776279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 11311416 - 11311352
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    ||||||||||| ||||||||||||||||| | |||||||||| ||| | |||||||||| |||||    
T  11311416 tttactcacataaagtgacatcacaatcaatataatacataatcaattagatttgtccatatcaa 11311352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 19438286 - 19438402
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  19438286 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 19438381  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  19438382 ctagatgtgtccatatcaaat 19438402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 21290268 - 21290323
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    |||||||| || |||||||||||||||||||||| ||||||| ||||| |||||||    
T  21290268 tttactcatatcaagtgacatcacaatcattttattacataatcaactagatttgt 21290323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 25231348 - 25231285
Alignment:
Q  74 ttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||| ||||||| || |||||    
T  25231348 ttactcacatcaagtgacatcacaatcattctattacataatcaactagatttgttcatatcaa 25231285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 25445808 - 25445924
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  25445808 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 25445903  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  25445904 ctagatgtgtccatatcaaat 25445924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 43288139 - 43288255
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  43288139 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 43288234  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  43288235 ctagatgtgtccatatcaaat 43288255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 19088833 - 19088775
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| | ||||||||||    
T  19088833 tttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgtcca 19088775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 635666 - 635568
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | ||| |||    
T  635666 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatatgt 635571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 14898167 - 14898069
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | ||| |||    
T  14898167 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatatgt 14898072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 5836826 - 5836871
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacat 64  Q
    ||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  5836826 gtacttcaggaccaattcaagttgtttatcattttcttgaggacat 5836871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 17320360 - 17320421
Alignment:
Q  70 atatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    |||||||||||||| ||||||||||  ||||||| |  ||||||| ||||| ||||||||||    
T  17320360 atatttactcacatcaagtgacatcgtaatcattctcgtacataatcaactagatttgtcca 17320421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 13364 - 13462
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  13364 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 13459  T

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Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 346448 - 346546
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  346448 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 346543  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 571461 - 571559
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  571461 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 571556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 16647807 - 16647709
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  16647807 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 16647712  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 25498437 - 25498339
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  25498437 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 25498342  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 32147862 - 32147764
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  32147862 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 32147767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 42208290 - 42208192
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  42208290 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 42208195  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7562558 - 7562494
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||||| |||||    
T  7562558 tttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgtccatatcaa 7562494  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 341043 - 341123
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcatt 103  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || |||||||||||||||||||    
T  341043 gtacttcagaaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcatt 341123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 17622168 - 17622070
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | ||| |||    
T  17622168 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatatgt 17622073  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 15716006 - 15715908
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  15716006 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 15715911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 33493711 - 33493809
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  33493711 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgt 33493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 15552223 - 15552159
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaa 137  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| | |||||||||| |||||    
T  15552223 tttactcacatcaagtgacatcacaatcattctattacataatcaattagatttgtccatatcaa 15552159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 11659587 - 11659534
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatata 72  Q
    ||||||||| ||||||| |||||||| ||||||||||||| |||||||| ||||    
T  11659587 gtacttcaggaccaattcaagttgtttatcattttcttgaggacataatctata 11659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 26028133 - 26028036
Alignment:
Q  28 aaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttg 127  Q
    |||||||| ||||||||||| | |||||||| ||||| || |    |||||||||  ||||||||||||||||||| ||||||| || ||| | ||||||    
T  26028133 aaccaattcaagttgttcataactttcttgaggacatgatct----ttactcacaccaagtgacatcacaatcattctaatacacaatcaattagatttg 26028038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 27164009 - 27164094
Alignment:
Q  78 tcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtccacatcaaattattttaacacattttcaatataa 163  Q
    |||||| || || ||||||| | ||| || ||||||| ||| | || ||||||| |||||||||||||||||||||| | ||||||    
T  27164009 tcacatcaattgtcatcacatttattctactacataatcaaatggaattgtccatatcaaattattttaacacatttcctatataa 27164094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 40275045 - 40275102
Alignment:
Q  74 ttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||| |  |||||||||    
T  40275045 ttactcacatcaagtgacatcacaatcattctagtacataatcaattaaatttgtcca 40275102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 111284 - 111168
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  111284 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 111189  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  111188 ctagatgtgtccatatcaaat 111168  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 16672918 - 16672802
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  16672918 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 16672823  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  16672822 ctagatgtgtccatatcaaat 16672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 17945206 - 17945151
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||    
T  17945206 tttactcacatcaagtgacatcacaatcattatattacataatcaactagatttgt 17945151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 21171936 - 21172052
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  21171936 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 21172031  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  21172032 ctagatgtgtccatatcaaat 21172052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 23054127 - 23054243
Alignment:
Q  19 gtacttcagaaccaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaa 118  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||||| || ||    |||| | || ||||||||||||||||||| || |||| |  |||    
T  23054127 gtacttcaggaccaattcaagttgtttatcattttcttgaggacatgatcta----tactaatatcaagtgacatcacaatcattatagtacacagtcaa 23054222  T
Q  119 cttgatttgtccacatcaaat 139  Q
    || ||| |||||| |||||||    
T  23054223 ctagatgtgtccatatcaaat 23054243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 1532481 - 1532539
Alignment:
Q  73 tttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgtcca 131  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| | ||||||||||    
T  1532481 tttactcacatcaagtgacatcacaatcattctagtacataatcaattagatttgtcca 1532539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 28367758 - 28367856
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    || ||||||| ||||||||||||||||||| || ||||||| ||| | |||||||    
T  28367758 accaattcaaattgttcatgattttcttgaggacatgatct----ttcctcacatcaagtgacatcacaatcattatagtacataatcaattagatttgt 28367853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 30958299 - 30958397
Alignment:
Q  29 accaatttaagttgttcatcattttcttgacgacataatatatatttactcacatgaagtgacatcacaatcattttaatacataaccaacttgatttgt 128  Q
    ||||||| || |||||||| |||||||||| ||||| || |    |||||||||| ||||||||||||||||||| || ||||||| ||| | ||||| |    
T  30958299 accaattcaaattgttcatgattttcttgaggacatgatct----ttactcacatcaagtgacatcacaatcattctagtacataatcaattagattttt 30958394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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