View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19129_low_1 (Length: 603)
Name: NF19129_low_1
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19129_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Original strand, 7629276 - 7629844
Alignment:
| Q |
18 |
gttatggcaaactaaagttcgaattttagaacaatgtccatatttaatgctaaccaacaagattaacttgggtggagcaaacttgtgggaaacaaaaata |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7629276 |
gttatggcaaactaaagttcgaattttagaacgatgtccatatttaatgctaacgaacaagattaacttgggtggagcaaacttgtgggaaacaaaaata |
7629375 |
T |
|
| Q |
118 |
aacacagaatcaaaggtgaagatttcaatgaaataaggacgagtccataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaat |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7629376 |
aacacagaatcaaaggtgaagatttcaataaaataaggacgagtccataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaat |
7629475 |
T |
|
| Q |
218 |
gatcattcatcatttgtaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactct |
317 |
Q |
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| T |
7629476 |
gatcattcatcatttgtaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactct |
7629575 |
T |
|
| Q |
318 |
ttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgattctatcaatccaaccaaacaatggaaaattatctgaaaag |
417 |
Q |
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| T |
7629576 |
ttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatccaaccaaacaatggaaaattatctgaaaag |
7629675 |
T |
|
| Q |
418 |
taaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaa |
517 |
Q |
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| T |
7629676 |
taaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactccttcttcataatcacaaa |
7629775 |
T |
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| Q |
518 |
catatgttttcccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagt |
586 |
Q |
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| T |
7629776 |
catatgttttcccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagt |
7629844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 149 - 586
Target Start/End: Original strand, 7636190 - 7636627
Alignment:
| Q |
149 |
aataaggacgagtccataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaat |
248 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
7636190 |
aataaggatgagtcaataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaat |
7636289 |
T |
|
| Q |
249 |
aatatcatctacttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgtt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7636290 |
aatatcatctacttcttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgtt |
7636389 |
T |
|
| Q |
349 |
ttatcaagcctcccaagtgttcctttgattctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
448 |
Q |
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| T |
7636390 |
ttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
7636489 |
T |
|
| Q |
449 |
taagcaaaacttgcaatctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgttttcccaaaagctatcttacatat |
548 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7636490 |
taagcaaaacttgcaatctacttctcttttgtccacttcccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatat |
7636589 |
T |
|
| Q |
549 |
aattgtatttgtgagagacatcaatatttcactcaagt |
586 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7636590 |
aattgtatttgtgagagacatcaatatttcactcaagt |
7636627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 163 - 586
Target Start/End: Original strand, 7623112 - 7623535
Alignment:
| Q |
163 |
cataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaataatatcatctactt |
262 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| ||||||||||||||||| | |||||||||||| || || || |||||||| ||||| | |||| |
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| T |
7623112 |
cataccataagcacagctttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaactt |
7623211 |
T |
|
| Q |
263 |
cttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctccc |
362 |
Q |
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|||| ||||| ||||||||| ||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7623212 |
cttgctccttggttttaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctccc |
7623311 |
T |
|
| Q |
363 |
aagtgttcctttgattctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgc |
462 |
Q |
| |
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||| ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||| |||| |||||||| || ||||||||||||||||||||| |
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| T |
7623312 |
aagagttcctttgattctatcaacccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgc |
7623411 |
T |
|
| Q |
463 |
aatctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgttttcccaaaagctatcttacatataattgtatttgtga |
562 |
Q |
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||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
7623412 |
aatctacttcttctttctccacttcccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtga |
7623511 |
T |
|
| Q |
563 |
gagacatcaatatttcactcaagt |
586 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
7623512 |
aagatatcaatatttcactcaagt |
7623535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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