View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19129_low_10 (Length: 227)

Name: NF19129_low_10
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19129_low_10
NF19129_low_10
[»] chr3 (1 HSPs)
chr3 (17-209)||(22192759-22192951)
[»] chr5 (2 HSPs)
chr5 (24-80)||(27133474-27133530)
chr5 (150-209)||(27133620-27133679)
[»] chr4 (2 HSPs)
chr4 (24-80)||(26410589-26410645)
chr4 (150-209)||(26410440-26410499)
[»] chr1 (1 HSPs)
chr1 (28-79)||(24028178-24028229)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 22192951 - 22192759
Alignment:
Q  17 attgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacacttttttagttgaataataagtgtttgatgacaacagaa 116  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  22192951 attgatatcatgaatgccctcattgatggacaacttagtgaaacaataagtgtttgaaacacttttttagttgaataataattgtttgataacaacagaa 22192852  T
Q  117 atcaatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac 209  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22192851 gtcaatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac 22192759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 27133474 - 27133530
Alignment:
Q  24 tcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt 80  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||    
T  27133474 tcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt 27133530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 27133620 - 27133679
Alignment:
Q  150 aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac 209  Q
    |||| |||||||| ||  ||||||||||||||| |||| |||||| ||||||||||||||    
T  27133620 aacagatgtaggggtaaaaccttcttccttgatcttggtatacttcagcatcacaaccac 27133679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 26410645 - 26410589
Alignment:
Q  24 tcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt 80  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||    
T  26410645 tcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt 26410589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 26410499 - 26410440
Alignment:
Q  150 aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac 209  Q
    |||| |||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  26410499 aacagatgtaggggtaaaaccttcttccttgatcttggcatacttcagcatcacaaccac 26410440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 24028178 - 24028229
Alignment:
Q  28 gaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacact 79  Q
    |||||||  |||||||| ||||||||||| || |||||||||||||||||||    
T  24028178 gaatgtcagcattgatgaacaacttagtgtaagaataagtgtttgaaacact 24028229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University