View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19129_low_2 (Length: 578)
Name: NF19129_low_2
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19129_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Original strand, 11855248 - 11855790
Alignment:
| Q |
18 |
aatagttccaacttctgcaattgaaacaaacatcgtatttatgagtgactttttgacaataatgaaataatacacaagttagtctaagagaatcccctaa |
117 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11855248 |
aatagttccaactgctgcaatcgaaacaaacatcgtatttatgagtgactttttgacaataatgaaataacacacaagttagtctaagagaatcccctaa |
11855347 |
T |
|
| Q |
118 |
tctaaatcccctaaattgtatactcgagtactcgaccgtgtattctcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccg |
217 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11855348 |
tctcaatcccctaaattgtatact--------cgaccgtgtattctcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagactg |
11855439 |
T |
|
| Q |
218 |
gggtggtatactcgactgtgtattctcagaactagcagcctttgacgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaactta |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855440 |
gggtggtatactcgactgcgtattctcagaactagcagccttcgacgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaactta |
11855539 |
T |
|
| Q |
318 |
ctcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacat |
417 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11855540 |
ctcggtgcttgaggcaaacccatatacaagtcaatcccatacatgtcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacat |
11855639 |
T |
|
| Q |
418 |
tcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgtt |
517 |
Q |
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| T |
11855640 |
tcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgtt |
11855739 |
T |
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| Q |
518 |
gatgtccattgctggatcaatgaccttttcgtacgtgcctttgttaagtat |
568 |
Q |
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| T |
11855740 |
gatgtccattgctggatcaatgaccttttcgtacgagcctttgttaagtat |
11855790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 163 - 547
Target Start/End: Complemental strand, 11838454 - 11838070
Alignment:
| Q |
163 |
tcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccggggtggtatactcgactgtgtattctcagaactagcagcctttga |
262 |
Q |
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||||| || ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
11838454 |
tcaaactttatcttgcatcattagatgtaaaggaatctgcaaatccaggagacctaggtggtatacttgactgtgtattctcacaactagcagccattga |
11838355 |
T |
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| Q |
263 |
cgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatg |
362 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| ||| | ||||||||||||||| || |
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| T |
11838354 |
cgaagtatacgaaacatcaagtgtgttgctcattccttcatgattctgccacttaatcagtgcttgaggcaaactcatatccaagtcaatcccatatata |
11838255 |
T |
|
| Q |
363 |
tcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcac |
462 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| || |||||||||| |||||||||||||| |
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| T |
11838254 |
tcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcac |
11838155 |
T |
|
| Q |
463 |
agcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgttgatgtccattgctggatcaatgaccttttc |
547 |
Q |
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| T |
11838154 |
aacagtggctagccaatcctgcaatagtcctgaaactctccaagccttcctcgtcgatgtccattgctggatcaatgaccttttc |
11838070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 163 - 548
Target Start/End: Complemental strand, 11851137 - 11850752
Alignment:
| Q |
163 |
tcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccggggtggtatactcgactgtgtattctcagaactagcagcctttga |
262 |
Q |
| |
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||||| ||||||| ||||||| ||||||||| |||| |||||||||||||||| || || ||||| |||||||||| |||| ||| ||||||| | || |
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| T |
11851137 |
tcaaatttcatcgcgcatcagcagatgtaaaagaattggcaaatccaggagaccgaggagggatacttgactgtgtatactcacaaccagcagccatcga |
11851038 |
T |
|
| Q |
263 |
cgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatg |
362 |
Q |
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||| | | ||||||||| |||||||||||| |||||||||||||| || ||||||| || ||||||| |||| || | ||||||||||||||||||| |
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| T |
11851037 |
agaagatttcgaaacatcaagtgtgttgctcgttccttcaagattcggccacttactaagtccttgaggaaaacttatatccaagtcaatcccatacatg |
11850938 |
T |
|
| Q |
363 |
tcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcac |
462 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||| || ||||||||||||||||||||||||| |
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| T |
11850937 |
tcatcagcttcaggttcagccggcttccaaatctcgacaagaggtgctagcacattcactacatgtcccatgtcaggacgctgatgaggctcccttgcac |
11850838 |
T |
|
| Q |
463 |
agcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcctcgttgatgtccattgctggatcaatgaccttttcg |
548 |
Q |
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| T |
11850837 |
aacattggcttgccaatcctgccatagtcctgaaactctccaggccttcctcgtctatgtccattgctggatcaatgaccttttcg |
11850752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 289 - 547
Target Start/End: Original strand, 27442121 - 27442379
Alignment:
| Q |
289 |
tgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattaggttcagccggctt |
388 |
Q |
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|||||||||||||||| |||| | |||| ||| | ||| ||| |||| ||| |||||| || |||| ||||||||| |||| ||||||||||||||| |
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| T |
27442121 |
tgctcattccttcaaggttcttccacttgctcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
27442220 |
T |
|
| Q |
389 |
ccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatg |
488 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||| || ||||||| || |||||||||| ||||||||||||| ||| |
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| T |
27442221 |
ccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtgtcttgccaattctgcaata |
27442320 |
T |
|
| Q |
489 |
atcctgaaactctccaagccttcctcgttgatgtccattgctggatcaatgaccttttc |
547 |
Q |
| |
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||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |
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| T |
27442321 |
gtcctgaaactctccaagccttcctcgtccattttcattgctggatcaatgacattttc |
27442379 |
T |
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