View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19129_low_4 (Length: 559)
Name: NF19129_low_4
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19129_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 45280669 - 45281188
Alignment:
| Q |
18 |
ataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatatacagaccaatctccacaa |
117 |
Q |
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| T |
45280669 |
ataatttctcacgttgatttggattttgagtctaaaatggcagaacagaacacttattcatcatgatgaaaaaatggcatatacagaccaatttccacaa |
45280768 |
T |
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| Q |
118 |
atggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgtacttatggttagttgtataacttgcct |
217 |
Q |
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| T |
45280769 |
atggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgtacttatggttagttgtataacttgcct |
45280868 |
T |
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| Q |
218 |
taaatttaaagcaatatatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatcactacgtaatgcgagatctgatctgtggttcactat |
317 |
Q |
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| T |
45280869 |
taaatttaaagca--atatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatcactacgtaatgcgagatctgatctgtgattcactat |
45280966 |
T |
|
| Q |
318 |
gttatgacgcatgacactcaaacaacaagaccacactagctatagctagctagctttgtgttgtaaattaaattaaatcgaactaactatggccaaccaa |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280967 |
gttatgacacatgacactcaaacaacaagaccacactagctatagctagctagctttgtgttgtaaattaaattaaatcgaactaactatggccaaccaa |
45281066 |
T |
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| Q |
418 |
taaaatcaaatttataaaatttataccggcccaacacatgttaatacgacctaatatccctggcctgagtggttgttatgggatgaaggtggtgagcgtt |
517 |
Q |
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| T |
45281067 |
taaaatcaaattta-------tataccggcccaacacatgttaatacgacctaatatccctggcctgagtggttgttatgggatgaaggtggtgagcgtt |
45281159 |
T |
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| Q |
518 |
gaacaactcctctgattacatgatgatgt |
546 |
Q |
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| T |
45281160 |
gaacaactcctctgattacatgatgatgt |
45281188 |
T |
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