View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19129_low_6 (Length: 363)
Name: NF19129_low_6
Description: NF19129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19129_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 124 - 349
Target Start/End: Complemental strand, 36536217 - 36535992
Alignment:
| Q |
124 |
taacactaacatatgtactagacatgttttcaatctgaagcgtcatgattcatagatgatacataactctaacgattagactatgatctatttaaaagta |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36536217 |
taacactaacatatgtactagacacgttttcaatctgaagcgtcatgattcatagatgatacataactctaacgattagactatgatctatttaaaagta |
36536118 |
T |
|
| Q |
224 |
attgaggaagcaatcttcaatttcacaaacataaagaatgtgctatgttttagtcttgacttggatgttttatgaaattaatgaagagattctaaccttt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36536117 |
attgaggaagcaatcttcaatttcacaaacataaagaatgtgctatgttttagccttgatttggatgttttatgaaattaatgaagagattctaaccttt |
36536018 |
T |
|
| Q |
324 |
ggatgttcatcatgaaactgataact |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36536017 |
ggatgttcatcatgaaactgataact |
36535992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 36536281 - 36536214
Alignment:
| Q |
11 |
cacagatatcgacactaaacaagacactaacacaataatttaagaaaattaaagcgattgaatgtaac |
78 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36536281 |
cacaaatatcgacactaaacaagacactaacacaataatttaagaaaattaaagcgattgaatgtaac |
36536214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 10440382 - 10440425
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgt |
87 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
10440382 |
aataatttaagaaaataaaagtgattgaatgttactacatgtgt |
10440425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 3943759 - 3943800
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgt |
85 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
3943759 |
aataatttaagaaaataaaagtgattgaatgtaaccacatgt |
3943800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 13912088 - 13912128
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatg |
84 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13912088 |
aatagtttaagaaaattaaagctattaaatgtaactacatg |
13912128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 1678683 - 1678730
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggt |
91 |
Q |
| |
|
|||||||| ||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
1678683 |
aataatttgagaaaatgaaagtgattaaatgtaactacatgtgttggt |
1678730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 21606644 - 21606597
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggt |
91 |
Q |
| |
|
|||||||||||||||| |||| |||| | ||||||||||||||||||| |
|
|
| T |
21606644 |
aataatttaagaaaataaaagtgattaagtgtaactacatgtgttggt |
21606597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 27131723 - 27131675
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
92 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
27131723 |
aataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtg |
27131675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 39941300 - 39941341
Alignment:
| Q |
46 |
taatttaagaaaattaaagcgattgaatgtaactacatgtgt |
87 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
39941300 |
taatttaagaaaatgtaagcgattgaatgtaaccacatgtgt |
39941341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 18315642 - 18315594
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
92 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||| |||||| |||||| |
|
|
| T |
18315642 |
aataatttaagaaaataaaagcgattaaatgaaaccacatgtattggtg |
18315594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 2468523 - 2468475
Alignment:
| Q |
44 |
aataatttaagaaaattaaagcgattgaatgtaactacatgtgttggtg |
92 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
2468523 |
aataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtg |
2468475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University