View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_high_10 (Length: 344)
Name: NF1912_high_10
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 8521829 - 8521876
Alignment:
| Q |
248 |
agattcttataaaattgtaaaatttcttgtaaaatgggtaaatgatcg |
295 |
Q |
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| T |
8521829 |
agattcttataaaattgtaaaatttcttgtaaaatctgtaaatgatcg |
8521876 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 8521790 - 8521831
Alignment:
| Q |
85 |
ttacaccacattggcatcggttctgcataattatgcagcaga |
126 |
Q |
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| T |
8521790 |
ttacaccacattggcatctgctctgcataattatgcagcaga |
8521831 |
T |
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