View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_high_15 (Length: 251)

Name: NF1912_high_15
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_high_15
NF1912_high_15
[»] chr2 (2 HSPs)
chr2 (10-235)||(31333329-31333554)
chr2 (10-235)||(31340059-31340284)
[»] chr3 (1 HSPs)
chr3 (10-182)||(1656879-1657051)
[»] chr4 (2 HSPs)
chr4 (10-235)||(644406-644643)
chr4 (42-70)||(546594-546622)
[»] chr8 (1 HSPs)
chr8 (10-72)||(28246592-28246654)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 31333329 - 31333554
Alignment:
Q  10 atgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31333329 atgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 31333428  T
Q  110 catcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattact 209  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31333429 catcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattact 31333528  T
Q  210 tgaacaaattcttgtgtcctccttat 235  Q
    ||||||||||||| |||||| |||||    
T  31333529 tgaacaaattcttatgtcctacttat 31333554  T

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Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 31340059 - 31340284
Alignment:
Q  10 atgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340059 atgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 31340158  T
Q  110 catcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatgacttatattact 209  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31340159 catcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgcttgtcgtcgctttgccatgacttatattact 31340258  T
Q  210 tgaacaaattcttgtgtcctccttat 235  Q
    ||||||||||||| |||||| |||||    
T  31340259 tgaacaaattcttatgtcctacttat 31340284  T

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Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 1657051 - 1656879
Alignment:
Q  10 atgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657051 atgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 1656952  T
Q  110 catcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcgttgcattgcttgt 182  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1656951 catcatgttatgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgcattgcattgcttgt 1656879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 644643 - 644406
Alignment:
Q  10 atgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgct 109  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  644643 atgaagtttgaattgtgaatttctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgct 644544  T
Q  110 catcatgttacgtgcgcatgacaaatgaataagttatt------------aagctattgattgtggagtgcgttgcattgcttgtcgtcgctttgccatg 197  Q
    |||||||||| ||| |||||||||||||||||||||||            ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  644543 catcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgcttgttgtcgctttgccatg 644444  T
Q  198 acttatattacttgaacaaattcttgtgtcctccttat 235  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  644443 acttatattacttgaacaaattcttgtttcctacttat 644406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 546622 - 546594
Alignment:
Q  42 ttgttttcagatttacttctatgagaaat 70  Q
    |||||||||||||||||||||||||||||    
T  546622 ttgttttcagatttacttctatgagaaat 546594  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28246592 - 28246654
Alignment:
Q  10 atgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaatta 72  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28246592 atgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 28246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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