View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_high_2 (Length: 601)

Name: NF1912_high_2
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_high_2
NF1912_high_2
[»] chr4 (6 HSPs)
chr4 (215-435)||(4167473-4167692)
chr4 (19-136)||(4167278-4167395)
chr4 (492-581)||(4167749-4167838)
chr4 (25-134)||(4174282-4174391)
chr4 (264-415)||(4174669-4174826)
chr4 (514-580)||(4174914-4174979)
[»] chr3 (4 HSPs)
chr3 (314-403)||(10018774-10018863)
chr3 (314-403)||(10123314-10123403)
chr3 (348-405)||(10180005-10180062)
chr3 (314-403)||(10256088-10256177)
[»] chr7 (4 HSPs)
chr7 (349-405)||(23613771-23613827)
chr7 (363-405)||(23613717-23613759)
chr7 (317-397)||(8083389-8083469)
chr7 (317-397)||(41832664-41832744)
[»] chr6 (1 HSPs)
chr6 (317-405)||(24249770-24249858)
[»] chr5 (2 HSPs)
chr5 (317-397)||(21254206-21254286)
chr5 (317-397)||(21256678-21256758)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 215 - 435
Target Start/End: Original strand, 4167473 - 4167692
Alignment:
Q  215 tgaagaatttacgtttcaattccaaattagacagcgaattattatcaa-tttcaatgatttttacatggttgatttcatatgaaacttaatcgttgatca 313  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  4167473 tgaagaatttacgtttcaatttcaaattagacagcaaattattatcaaatttcaatgatttttacctcgttgatttcatatgaaacttagtcgttgatca 4167572  T
Q  314 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatatacc 413  Q
    |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  4167573 t--tgttacgaaacgtggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaatgaatgaacatatacc 4167670  T
Q  414 ttctaataagaggtggttacaa 435  Q
    ||||||||||||||||||||||    
T  4167671 ttctaataagaggtggttacaa 4167692  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 4167278 - 4167395
Alignment:
Q  19 gatctcgtgaaatctgtatgcaatgcctacaagggtcctttgagattcagagcttgcaaaagatggaaagttgtgaacatgtctaataagggggtgttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  4167278 gatctcgtgaaatctgtatgcaatgcctacaagggtcctttgagattcagagcttgcaaaagatggaaagtggagaacatgtctaataagagggtgttcc 4167377  T
Q  119 cataataacattctaggg 136  Q
    ||||||||||||||||||    
T  4167378 cataataacattctaggg 4167395  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 492 - 581
Target Start/End: Original strand, 4167749 - 4167838
Alignment:
Q  492 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatcc 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4167749 gtacgtggaatgttagaaacttagaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatcc 4167838  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 4174282 - 4174391
Alignment:
Q  25 gtgaaatctgtatgcaatgcctacaagggtcctttgagattcagagcttgcaaaagatggaaagttgtgaacatgtctaataagggggtgttcccataat 124  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||    
T  4174282 gtgaaatatgtatgcaatgcctacaagggtcctttgagattcaaagcttgcaaaagatggaaagtggtgaacatatctaataaggaggtgttcccatgat 4174381  T
Q  125 aacattctag 134  Q
    || |||||||    
T  4174382 aatattctag 4174391  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 264 - 415
Target Start/End: Original strand, 4174669 - 4174826
Alignment:
Q  264 ttcaatgatttttacatggttgatttcatatgaaacttaatcgttga------tcatgttgttacgaaacgtggcatcaatagaagaaatgagagaaaag 357  Q
    ||||||||||||||| |  |||||||||||||||||||| |||| ||      ||||||||||| ||||| |  |||  ||| ||  |||||||||||||    
T  4174669 ttcaatgatttttacctcattgatttcatatgaaacttagtcgtcgaggtcgatcatgttgttatgaaacattacattcatataaagaatgagagaaaag 4174768  T
Q  358 ttactaactctttttatcgatgaaaataaaatattacaaatgagtgaacatatacctt 415  Q
    |||  |||||||| |||  ||||||||| ||||||||||||||||||||| |||||||    
T  4174769 ttagaaactctttgtattaatgaaaatagaatattacaaatgagtgaacaaatacctt 4174826  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 514 - 580
Target Start/End: Original strand, 4174914 - 4174979
Alignment:
Q  514 agaaacttagccaagatctttcacattatttccttatgattttttctaacataagaggatcctaatc 580  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  4174914 agaaacttagccaagatcttccacattattttcttatgattttttc-aacataagaggatcctaatc 4174979  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 10018774 - 10018863
Alignment:
Q  314 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 403  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10018774 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10018863  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 10123314 - 10123403
Alignment:
Q  314 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 403  Q
    |||||||| ||||| ||||||| ||  ||  || ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||    
T  10123314 tgttgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtg 10123403  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 10180005 - 10180062
Alignment:
Q  348 gagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 405  Q
    ||||||||| | || |||||||| ||| |||| |||| ||||||||||||||||||||    
T  10180005 gagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaatgagtgaa 10180062  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 10256088 - 10256177
Alignment:
Q  314 tgttgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtg 403  Q
    |||||||| ||||| ||||||| || |||  || ||||||||| | || |||| ||| ||| |||| |||| ||||||||||||||||||    
T  10256088 tgttgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaatgagtg 10256177  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 23613827 - 23613771
Alignment:
Q  349 agagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 405  Q
    |||||||| | || |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613827 agagaaaactaacaaactctttttattgatggaaatgaaatattacaaatgagtgaa 23613771  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 405
Target Start/End: Complemental strand, 23613759 - 23613717
Alignment:
Q  363 aactctttttatcgatgaaaataaaatattacaaatgagtgaa 405  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  23613759 aactctttttattgatggaaatgaaatattacaaatgagtgaa 23613717  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 8083389 - 8083469
Alignment:
Q  317 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 397  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | |  |||||||| ||| ||||||||| ||||||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaa 8083469  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 41832744 - 41832664
Alignment:
Q  317 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 397  Q
    ||||| ||||| ||||||| || |||| |||||||||||| | |  |||||||| ||| |||||||||  |||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaa 41832664  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 24249858 - 24249770
Alignment:
Q  317 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaatgagtgaa 405  Q
    ||||| ||||| ||||||||||  ||  |||||||||||| | || |||||||| |||  ||| ||||  |||||||||||||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaatgagtgaa 24249770  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 21254286 - 21254206
Alignment:
Q  317 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 397  Q
    ||||| ||||| ||||||| || |||| || ||||||||||| || |||||||| ||| ||||||||   |||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaa 21254206  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 21256758 - 21256678
Alignment:
Q  317 tgttacgaaacgtggcatcaatagaagaaatgagagaaaagttactaactctttttatcgatgaaaataaaatattacaaa 397  Q
    ||||| ||||| ||||||| || |||| || ||||||||| | || |||||||| ||| |||||||||  |||||||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaa 21256678  T

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