View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_high_20 (Length: 217)
Name: NF1912_high_20
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14923428 - 14923629
Alignment:
| Q |
1 |
accctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnnnn-gtacaaatccacatgcatattcaatccatgtg |
99 |
Q |
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| T |
14923428 |
accctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacaaaaaaaaaaaagtacaaatccacatgcatattcaatccatatg |
14923527 |
T |
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| Q |
100 |
atcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtgatgcaacagtttcctctaacattactt |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
14923528 |
atcccttgtattttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctccaacattactt |
14923627 |
T |
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| Q |
200 |
tc |
201 |
Q |
| |
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|| |
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| T |
14923628 |
tc |
14923629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14914942 - 14915138
Alignment:
| Q |
1 |
accctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnnnngtacaaatccacatgcatattcaatccatgtga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14914942 |
accctatatctaagatatattcccaa---cacttcttcattgtcatctttttcaacaaaaaaaaaa-gtacaaatccacatgcatattcaatccatgtga |
14915037 |
T |
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| Q |
101 |
tcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtgatgcaacagtttcctctaacattacttt |
200 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
14915038 |
tcccttgtattttgttgattttcaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctccaacattacttt |
14915137 |
T |
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