View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_high_4 (Length: 398)
Name: NF1912_high_4
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 44856316 - 44856696
Alignment:
| Q |
1 |
accaggtgcaaccataatcctaaccatgtttggtaccaaccttgaagacttgtccccacccatatcttccatgtaaacagaatcaaagttgactccttta |
100 |
Q |
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| T |
44856316 |
accaggtgcaaccataatcctaaccatgtttggtaccaaccttgaagacttgtccccacccatatcttccatgtaaacagaatcaaagttgactccttta |
44856415 |
T |
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| Q |
101 |
tcaactctaaatatttgtaaacttggatgaactgaattagccaacaaatgaaccatccaaacactctttgaagcaacaaagaaagcttgcaatagtggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856416 |
tcaactctaaatatttgtaaacttggatgaactgaattagccaacaaatgaaccatccaaacactctttgaagcaacaaagaaagcttgcaatagtggtt |
44856515 |
T |
|
| Q |
201 |
cagaccaagccctattccaacccaacatagcaacaatttcactcatttttctatcacaaaatctactaaaatcttcactaaaatgtcttgtccctttgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856516 |
cagaccaagccctattccaacccaacatagcaacaatttcactcatttttctatcacaaaatctactaaaatcttcactaaaatgtcttgtccctttgct |
44856615 |
T |
|
| Q |
301 |
caaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaatat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856616 |
caaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaatat |
44856696 |
T |
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