View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_10 (Length: 366)

Name: NF1912_low_10
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_10
NF1912_low_10
[»] chr1 (12 HSPs)
chr1 (1-357)||(36729358-36729697)
chr1 (126-339)||(26049273-26049486)
chr1 (4-339)||(20062932-20063268)
chr1 (171-332)||(26051379-26051540)
chr1 (36-192)||(20059910-20060070)
chr1 (133-279)||(16802956-16803102)
chr1 (1-89)||(43043333-43043421)
chr1 (203-337)||(46887192-46887326)
chr1 (1-53)||(26049538-26049590)
chr1 (209-337)||(43043100-43043228)
chr1 (203-337)||(46889213-46889347)
chr1 (262-337)||(30786668-30786743)
[»] chr5 (10 HSPs)
chr5 (55-333)||(10735158-10735437)
chr5 (130-339)||(33270743-33270959)
chr5 (1-89)||(7014809-7014897)
chr5 (109-287)||(1494499-1494677)
chr5 (209-324)||(7015022-7015137)
chr5 (203-332)||(31813152-31813281)
chr5 (238-337)||(20506720-20506819)
chr5 (1-50)||(1494760-1494809)
chr5 (238-337)||(21946757-21946856)
chr5 (155-251)||(36394562-36394658)
[»] chr3 (13 HSPs)
chr3 (1-332)||(25484575-25484911)
chr3 (141-292)||(17767603-17767758)
chr3 (141-292)||(19068904-19069059)
chr3 (1-80)||(49021108-49021187)
chr3 (126-212)||(36801968-36802054)
chr3 (1-77)||(43543553-43543629)
chr3 (126-272)||(36518897-36519043)
chr3 (111-299)||(1257680-1257868)
chr3 (1-89)||(16467694-16467782)
chr3 (238-327)||(49237486-49237575)
chr3 (261-337)||(39944909-39944985)
chr3 (203-327)||(43543730-43543854)
chr3 (1-47)||(39944691-39944737)
[»] chr6 (1 HSPs)
chr6 (1-339)||(240836-241173)
[»] chr4 (18 HSPs)
chr4 (51-251)||(11087458-11087659)
chr4 (1-90)||(46611752-46611841)
chr4 (1-89)||(4947441-4947529)
chr4 (5-89)||(24777998-24778082)
chr4 (1-89)||(53019815-53019903)
chr4 (203-337)||(54349545-54349679)
chr4 (131-228)||(24411934-24412031)
chr4 (220-332)||(12571483-12571595)
chr4 (203-337)||(35801761-35801895)
chr4 (203-337)||(53019592-53019726)
chr4 (203-337)||(39162799-39162933)
chr4 (203-337)||(5555582-5555716)
chr4 (238-337)||(55440918-55441017)
chr4 (203-332)||(46611928-46612057)
chr4 (1-51)||(5555826-5555876)
chr4 (209-338)||(4947625-4947754)
chr4 (202-338)||(24778171-24778307)
chr4 (23-51)||(24412076-24412104)
[»] chr8 (12 HSPs)
chr8 (126-281)||(375419-375574)
chr8 (1-339)||(33545560-33545878)
chr8 (61-265)||(410935-411142)
chr8 (209-338)||(24800349-24800478)
chr8 (201-332)||(12230931-12231062)
chr8 (1-87)||(24800576-24800662)
chr8 (1-89)||(24801556-24801644)
chr8 (1-89)||(33327745-33327833)
chr8 (203-332)||(33327525-33327656)
chr8 (28-89)||(31518498-31518559)
chr8 (1-51)||(12231326-12231376)
chr8 (203-332)||(24801338-24801466)
[»] chr2 (13 HSPs)
chr2 (1-89)||(24574184-24574272)
chr2 (1-89)||(27614077-27614164)
chr2 (1-90)||(10374655-10374745)
chr2 (203-332)||(11105434-11105563)
chr2 (1-86)||(36561728-36561813)
chr2 (1-77)||(10377241-10377317)
chr2 (210-337)||(27614260-27614387)
chr2 (203-326)||(19259286-19259409)
chr2 (1-89)||(22615552-22615640)
chr2 (203-337)||(10377006-10377140)
chr2 (210-337)||(10374463-10374590)
chr2 (203-327)||(36558553-36558674)
chr2 (210-337)||(24574368-24574494)
[»] scaffold0007 (2 HSPs)
scaffold0007 (130-221)||(197772-197863)
scaffold0007 (261-349)||(197675-197761)
[»] chr7 (3 HSPs)
chr7 (203-337)||(4588270-4588404)
chr7 (203-332)||(218404-218533)
chr7 (1-51)||(218650-218700)
[»] scaffold0316 (1 HSPs)
scaffold0316 (238-337)||(11297-11396)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 36729697 - 36729358
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcacttcaactttgtt 100  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  36729697 aaactacaattaaatcctacggtttaaattaaaagtagaaataacttcctataacttcctaaaacactagaaaataacttctatgcacttcaaccttgtt 36729598  T
Q  101 tctgccatgctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  36729597 tctgccatgctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacattaagtt 36729498  T
Q  201 acttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaa 300  Q
    ||||||||||| ||||||||||| ||||||   ||       ||  |||||  ||       |||||||||| ||||||||||||||||||| |||||||    
T  36729497 acttggttgaagttgcggtatgtcgaagcc---at-------gtgaaaatctctt-------tgcagcatgtagaaataacccatctaacttatcgaaaa 36729415  T
Q  301 tataatcatgatttcgaccaaatattttatttgtggtatgatcagatatatacctat 357  Q
    |||||||||||||||||||||||||||||||| |||||| | || ||| ||||||||    
T  36729414 tataatcatgatttcgaccaaatattttatttttggtattaacatataaatacctat 36729358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 339
Target Start/End: Complemental strand, 26049486 - 26049273
Alignment:
Q  126 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttg 225  Q
    |||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| |    
T  26049486 tgcactccaattgtaacttcaaattatttatccttatctctggtcgaaaaccatatgcatgcaacacattaaatcacttggtcgaaattgcggtatgtcg 26049387  T
Q  226 aagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatat 325  Q
    |||  |||||  |||||||||||||   |||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  26049386 aagtttgtatgctcttggtcgaaatatctttgcactttgcagcatgtcgaaataactcatctaacttatcgaaaatataatcatgatttcgaccaaatat 26049287  T
Q  326 tttatttgtggtat 339  Q
    ||||||| ||||||    
T  26049286 tttatttttggtat 26049273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 20062932 - 20063268
Alignment:
Q  4 ctaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcacttcaactttgttt-c 102  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||| |    
T  20062932 ctaccactaaatcctagagtctaaattaaaagtagaaacaacttcctataacttcctaagacagtagaaaataacttccatgcacttcagccttgtttgc 20063031  T
Q  103 tgc--catgctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcg-aaaaccatatgcatgcaacacatcaagt 199  Q
     ||  ||  |||||||||| ||||||||||| ||| | |||||||||||||||||| ||| | |||||||| ||||||||||||||||||              
T  20063032 cgctacacactccactttgacttattgcacttcaactgtaacttcagattatttctacttgtgtttggtcgaaaaaccatatgcatgcaa---------- 20063121  T
Q  200 cacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaa--------atcgttttgcattttgcagcatgtggaaataacccatctaact 291  Q
    ||||||||  ||||||||||| || |||| ||||||| ||||  |||||        |||  |||| | |||||||||||| ||||||||| |||| |||    
T  20063122 cacttggtcaaaattgcggtacgtcgaagtctgtatactctttatcgaaattgcggcatctctttgtaatttgcagcatgtcgaaataacctatctgact 20063221  T
Q  292 tttcgaaaatataatcatgatttcgaccaaatattttatttgtggtat 339  Q
    | ||| |||||||||||||| |||||||||||||| ||||| ||||||    
T  20063222 tgtcg-aaatataatcatgacttcgaccaaatattatatttttggtat 20063268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 26051540 - 26051379
Alignment:
Q  171 gaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcat 270  Q
    |||||||| |||| |||||||||| || ||||||||| |||||||| |||||| |||| ||||||  |||||||||||||| ||||||| ||||||  ||    
T  26051540 gaaaaccacatgcgtgcaacacattaaatcacttggtcgaaattgcagtatgtcgaagtctgtatgctcttggtcgaaatctttttgcactttgcaatat 26051441  T
Q  271 gtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttattt 332  Q
    || |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  26051440 gtcgaaaaaactcatctaacttgtcgaaaatataatcatgatttcgacaaaatattttattt 26051379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 20059910 - 20060070
Alignment:
Q  36 tagaaataacttcctataacttcctaagacactagaaaataacttctatgcacttcaactttgttt-ctgc--catgctccactttgccttattgcactc 132  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||| | |||||||| | |||||| ||||  || |||||||||||||||||||||| |    
T  20059910 tagaaacaacttcctataacttcataagacactaggaaataacttcgacgcacttcagccttgtttgctgctacacgctccactttgccttattgcaccc 20060009  T
Q  133 caattataacttcagattatttctccttatctttggtcg-aaaaccatatgcatgcaacac 192  Q
    ||| | |||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||    
T  20060010 caactgtaacttcagattatttctactcgtctttggtcgaaaaactatatgcatgcaacac 20060070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 16802956 - 16803102
Alignment:
Q  133 caattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctg 232  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || || ||||||||| |||| |  |||||||  ||| |||    
T  16802956 caattgtaacttcagattatttatccttatctttagtcgaaaaccatatgcatgcaacatattaaatcacttggtcgaaaatatggtatgtcaaagtctg 16803055  T
Q  233 tatattcttggtcgaaatcgttttgcattttgcagcatgtggaaata 279  Q
    |||  ||||||||||||||  |||||| |||||||||||| ||||||    
T  16803056 tatgctcttggtcgaaatcactttgcactttgcagcatgtcgaaata 16803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43043421 - 43043333
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  43043421 aaactaccactaaatcctacggtctatattaaaagtaaaaataactttctataacttcctaagacactagaaaatatcttccatgcact 43043333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 46887192 - 46887326
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | |||| ||||||  ||||||||||||||  |||||| |||||| ||||| |||||||| |||||  ||| ||||||| |    
T  46887192 ttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataactcatctgccttgtcgaaaaca 46887291  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||| | ||||||||||||||| |||| ||||    
T  46887292 taatcattagttcgaccaaatatttcatttttggt 46887326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26049590 - 26049538
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctata 53  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26049590 aaactaccactaaatcatacggtctaaattaaaagtagaaataacttcctata 26049538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 43043228 - 43043100
Alignment:
Q  209 gaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatca 308  Q
    ||||||||||| ||| |||| |||| | || ||||||||||||  |||||| |||||||  ||| ||||||||||||||  ||| ||||||| |||||||    
T  43043228 gaaattgcggtgtgtcgaagtctgtcttttattggtcgaaatccctttgcactttgcagtgtgttgaaataacccatctgccttgtcgaaaacataatca 43043129  T
Q  309 tgatttcgaccaaatattttatttgtggt 337  Q
    ||| ||| ||||||||||| |||| ||||    
T  43043128 tgagttccaccaaatatttcatttttggt 43043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 46889213 - 46889347
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | |||| ||||||  ||||||||||||||  |||||| |||| | ||||| |||||||| |||||  ||| ||||||| |    
T  46889213 ttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgaaacatgtcgaaataactcatctgccttgtcgaaaaca 46889312  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||| | ||| ||||||||||| |||| ||||    
T  46889313 taatcattagttcaaccaaatatttcatttttggt 46889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 30786668 - 30786743
Alignment:
Q  262 ttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||| ||||| ||||||||||||||  ||| |||||||||||||||| | |||||| |||||||| |||| ||||    
T  30786668 ttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcataagttcgactaaatatttcatttttggt 30786743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 10735158 - 10735437
Alignment:
Q  55 cttcctaagacactagaaaataacttctatgcacttcaactttgtttct-gccatgctccactttgccttattgcactccaattataacttcagattatt 153  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10735158 cttcctaagacactagaaaataacttctatgcacttcaaccttgtttgttggcatgctccactttgccttattgcactccaattataacttcagattatt 10735257  T
Q  154 tctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgt 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||   || ||||||||||||||||||||  ||| || ||| |||||||||||||||      
T  10735258 tctccttatctttggtcgaaaaccatatgcatgcaacacattaaagtacatggttgaaattgcggtatgtcaaagtctttatgttcttggtcgaaatctc 10735357  T
Q  254 tttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttg 333  Q
    |||| | |||||||||||| |||||||| |||||  ||| || ||||||||||||||||||| |||||||||||| ||||    
T  10735358 tttgtactttgcagcatgttgaaataactcatctgccttgtcaaaaatataatcatgatttcaaccaaatattttttttg 10735437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 130 - 339
Target Start/End: Complemental strand, 33270959 - 33270743
Alignment:
Q  130 ctccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagc 229  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||     
T  33270959 ctccaattgcaacttcaaattatttctccttgtctttggtcgaaaaccatatgcatgcaacacattaagtcacttggtcgaaattgcggtgtgtcgaagt 33270860  T
Q  230 ctgtatattcttggtcgaa--------atcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaa 321  Q
     ||| | ||||||||||||        |||  |||||| |||| ||||||| |||| ||||||| |  ||| ||| |||||||||||||| |||||||||    
T  33270859 atgtgtgttcttggtcgaaattgcggtatctctttgcactttggagcatgtcgaaagaacccatatggcttgtcg-aaatataatcatgagttcgaccaa 33270761  T
Q  322 atattttatttgtggtat 339  Q
     |||||||||| ||||||    
T  33270760 gtattttatttttggtat 33270743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 7014809 - 7014897
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  7014809 aaactaccactaaatcctacggtctagattaaaaatagaaataacttcttataacttcctaagacactagaaaataacttccatgcact 7014897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 1494677 - 1494499
Alignment:
Q  109 gctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggtt 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||||||| |||||||||||||||| ||  ||||||||     
T  1494677 gctccactttgccttattgcactccaattgtaacttcagattatttctcattgtctttgatcgaaaaccttatgcatgcaacacattaaaacacttggtc 1494578  T
Q  209 gaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatct 287  Q
    |||| | | |||||| |||  ||||||  |||| || ||||||  |||||| | || || |||| ||||||||| ||||    
T  1494577 gaaaatacagtatgtcgaaatctgtatgctcttagtagaaatccctttgcactgtgtagtatgtcgaaataacctatct 1494499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 7015022 - 7015137
Alignment:
Q  209 gaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatca 308  Q
    ||||||||||| ||| |||| |||||| || |||||| |||||  ||| || |||||||||||| ||||||||||||||  ||| |||||||||||||||    
T  7015022 gaaattgcggtgtgtcgaagtctgtatgttattggtcaaaatccctttacactttgcagcatgtcgaaataacccatctgccttgtcgaaaatataatca 7015121  T
Q  309 tgatttcgaccaaata 324  Q
    ||| ||||||||||||    
T  7015122 tgaattcgaccaaata 7015137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 31813281 - 31813152
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||||| | |||| ||||||  ||||||||||||||  |||||| |||||| ||||| |||||||||||| |  ||| ||||||| |    
T  31813281 ttggtcgaaattgcggtatatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaaca 31813182  T
Q  303 taatcatgatttcgaccaaatattttattt 332  Q
    ||||| ||| ||||||||||||||| ||||    
T  31813181 taatcgtgagttcgaccaaatatttcattt 31813152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 20506819 - 20506720
Alignment:
Q  238 tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||||||||  |||||| |||||||||||| |||||||| |||||  ||| ||||||| |||||||| | ||||||||||||||| |||| ||||    
T  20506819 tcttggtcgaaatccctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggt 20506720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1494809 - 1494760
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcct 50  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1494809 aaactaccaataaatcctacggtctaaattaaaagtagaaataacttcct 1494760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 21946856 - 21946757
Alignment:
Q  238 tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||||||||  ||| || | || ||||||| ||||||||||||||  ||| ||||||| |||||||||| ||||||||||||||| |||| ||||    
T  21946856 tcttggtcgaaatccctttacactctgaagcatgtcgaaataacccatctgccttatcgaaaacataatcatgagttcgaccaaatatttcatttttggt 21946757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 36394658 - 36394562
Alignment:
Q  155 ctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatc 251  Q
    |||||||||||||||| |||| ||| ||||||||| |||| ||  || ||||| |||| ||| |||| | |||| ||||||  ||||| ||||||||    
T  36394658 ctccttatctttggtcaaaaatcatgtgcatgcaatacattaaaacatttggtcgaaaatgcagtatatcgaagtctgtatgctcttgatcgaaatc 36394562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 25484575 - 25484911
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctata----acttcctaagacactagaaaataacttctatgcacttcaactt 96  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||    ||||||||||||||||| ||||||||||||||||| ||||| |    
T  25484575 aaactaccactaaatcatacggtctaaattaaaagtagaaacaacttcctatatataacttcctaagacactaggaaataacttctatgcacatcaacct 25484674  T
Q  97 tgttt-ctgccatgctccactttgccttatt-gcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacat 194  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||| ||||||     
T  25484675 tgtttgctgcgatgctccactttgccttatttgcactccaattataatttcaaattatttttccttatctttggttgaaaaccatatgcatgaaacacaa 25484774  T
Q  195 caagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaactttt 294  Q
     ||  |||||| | ||||||||||||| | |||| |||||| ||||||||||||||   ||| || |||||||||||| ||||||||| |||  |||| |    
T  25484775 taaagcacttgatcgaaattgcggtatatcgaagtctgtatgttcttggtcgaaatttctttacactttgcagcatgtcgaaataacctatcagacttat 25484874  T
Q  295 cgaaaatataatcatgatttcgaccaaatattttattt 332  Q
    || ||| ||||||||||||||||||||||||| |||||    
T  25484875 cg-aaacataatcatgatttcgaccaaatattatattt 25484911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 17767603 - 17767758
Alignment:
Q  141 acttcagattatttctccttatctttggtcgaaaaccatatgc----atgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtata 236  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    ||||||||||| ||||||||||||  ||||||||||||||  |||  |||||     
T  17767603 acttcaaattatttctccttatctttggtcaaaaaccatatgcatgcatgcaacacattaagtcacttggtcaaaattgcggtatgtcaaagtttgtatg 17767702  T
Q  237 ttcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaactt 292  Q
    ||||| |||||||||  |||||| |||||| ||||| ||||||| |||||| ||||    
T  17767703 ttcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatctgactt 17767758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 19068904 - 19069059
Alignment:
Q  141 acttcagattatttctccttatctttggtcgaaaaccatatgc----atgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtata 236  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    ||||||||||| ||||||||||||  ||||||||||||||  |||  |||||     
T  19068904 acttcaaattatttctccttatctttggtcaaaaaccatatgcatgcatgcaacacattaagtcacttggtcaaaattgcggtatgtcaaagtttgtatg 19069003  T
Q  237 ttcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaactt 292  Q
    ||||| |||||||||  |||||| |||||| ||||| ||||||| |||||| ||||    
T  19069004 ttcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatctgactt 19069059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 49021108 - 49021187
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataactt 80  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  49021108 aaactaccactaaatcttacggtctatattgaaagtagaaataacttcctataacctcctaagacactggaaaataactt 49021187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 36802054 - 36801968
Alignment:
Q  126 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaa 212  Q
    |||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||    
T  36802054 tgcactccaattgtaactttaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcacttggtcgaaa 36801968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43543553 - 43543629
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataa 77  Q
    ||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  43543553 aaactaccattaaatcctaaggtctatattataagtagaaataacttcctataacctcctaagacactagaaaataa 43543629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 272
Target Start/End: Original strand, 36518897 - 36519043
Alignment:
Q  126 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttg 225  Q
    |||||||||||| ||| |||| || |||||||||||||||||| |||||||   ||||||||||||||| || |||||||||  ||| || |||||||      
T  36518897 tgcactccaattgtaagttcatatcatttctccttatctttggccgaaaacagaatgcatgcaacacattaaatcacttggtcaaaaatgtggtatgtca 36518996  T
Q  226 aagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgt 272  Q
    |||  || ||  ||||||||||||||  |||||| ||||||||||||    
T  36518997 aagtttgaatgctcttggtcgaaatccatttgcactttgcagcatgt 36519043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 1257868 - 1257680
Alignment:
Q  111 tccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttga 210  Q
    |||||||| ||||||  ||  ||||||  |||||||||||||||||||||||||||||| |||| ||  |||| || |||| || ||  |||||||||||    
T  1257868 tccactttaccttataacatcccaattgcaacttcagattatttctccttatctttggttgaaagccgcatgcttgaaacatattaaaacacttggttga 1257769  T
Q  211 aattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaa 299  Q
    || ||||| |||| |||   | |||  ||||| ||||||||  |||||| |||||||||||| |||||||| ||| | |||| ||||||    
T  1257768 aaatgcggcatgtcgaattttatatgctcttgctcgaaatccgtttgcactttgcagcatgttgaaataactcatttgacttgtcgaaa 1257680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16467694 - 16467782
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    ||||||||||| ||||||||||| |  |||| || ||||||||||||| |||||| |||||||||||| |||||||||||| |||||||    
T  16467694 aaactaccactgaatcctacggtttggattacaaatagaaataacttcttataacgtcctaagacacttgaaaataacttccatgcact 16467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 49237575 - 49237486
Alignment:
Q  238 tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattt 327  Q
    ||||| ||||||||  |||| |||||||||||||| |||||||| |||||| ||| || | ||||||||||||||||||||| |||||||    
T  49237575 tcttgatcgaaatctctttgtattttgcagcatgtcgaaataactcatctaccttatcaagaatataatcatgatttcgaccgaatattt 49237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 39944909 - 39944985
Alignment:
Q  261 tttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    |||||||||||| ||||||||||||||  ||| ||||||| |||||||||| ||||||||||||||| |||| ||||    
T  39944909 tttgcagcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatatttcatttttggt 39944985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 43543730 - 43543854
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| ||||  ||||| || ||||||||||||  |||||| |||||||| ||| |||||||| |||||  ||| ||||  |||    
T  43543730 ttggtcgaaattgcggtgtgtcgaagtatgtatgttattggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttgtcgacgata 43543829  T
Q  303 taatcatgatttcgaccaaatattt 327  Q
     ||||| || |||||||||||||||    
T  43543830 gaatcaggagttcgaccaaatattt 43543854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39944691 - 39944737
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataactt 47  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39944691 aaactaccgctaaatcctacggtctatattaaaagtagaaataactt 39944737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 241173 - 240836
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcacttcaactttgtt 100  Q
    |||||| ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  241173 aaactagcactaaatcatacagtctacattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcatttcaaccttgtt 241074  T
Q  101 tct-gccatgctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagt 199  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||||| ||      
T  241073 tgttgccatgctccactttgccttattgcactccaattataacttcagactatttctccttatctttgtttgaaaaccatatgcatgtaacacattaaag 240974  T
Q  200 cacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaa 299  Q
    | ||||||| ||| ||| |||||| ||||  || ||  ||||||| | ||||  ||| || |||| ||||||| ||||| ||| ||||||||| ||||||    
T  240973 cccttggttaaaaatgcagtatgtagaagtttgcatgctcttggttg-aatccctttacactttgtagcatgtcgaaat-acctatctaacttgtcgaaa 240876  T
Q  300 atataatcatga-tttcgaccaaatattttatttgtggtat 339  Q
    | |||||||||| ||| | ||||||||||||||| ||||||    
T  240875 a-ataatcatgatttttggccaaatattttatttatggtat 240836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 51 - 251
Target Start/End: Original strand, 11087458 - 11087659
Alignment:
Q  51 ataacttcctaagacactagaaaataacttctatgcacttcaactttgttt-ctgccatgctccactttgccttattgcactccaattataacttcagat 149  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||    
T  11087458 ataacttcctaagacactagaaaataacttccatgcacttcagatttgtttgctgccatattccactttgccttattgcactccaattataacttcatat 11087557  T
Q  150 tatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaa 249  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||  |||||||| |||| ||| | ||||||||| || |||  |||| |||||||    
T  11087558 tatttctccttatctatagtcgaaaaccatatgcatgcaacacattaaaacacttggtcgaaaatgcagaatgttgaagtctatatgctcttagtcgaaa 11087657  T
Q  250 tc 251  Q
    ||    
T  11087658 tc 11087659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46611752 - 46611841
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcactt 90  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  46611752 aaactaccactaaatcctacggtctatattaaaagtagaaataacttcctataacttcctaagacactaggaaataatttccatgtactt 46611841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4947441 - 4947529
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  4947441 aaactaccactaaatcctacggtctagattaaaaatagaaataacttcttataacttcctaagacattagaaaataacttccatgcact 4947529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 24777998 - 24778082
Alignment:
Q  5 taccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24777998 taccactaaatcctacggtctagattaaaaatagaaataacttcttataacttcctaagacactagaaaataacttccatgcact 24778082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 53019903 - 53019815
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  53019903 aaactatcactaaatcctacggtctatattaaaagtagaaataacttcctataacttcccaagacactagaaaataactttcatgcact 53019815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 54349545 - 54349679
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | |||| ||||||| ||||||||||||||  |||||| |||||| ||||| ||||||||||||||  ||| |||||||||    
T  54349545 ttggtcgaaattgcggtgtatcgaagtctgtatactcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaata 54349644  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||| ||||||||||||||| |||| ||||    
T  54349645 taatcatgagttcgaccaaatatttcatttttggt 54349679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 24412031 - 24411934
Alignment:
Q  131 tccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaag 228  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| | ||||||||||||||| ||||    
T  24412031 tccaattgtaacttcatattatttctccttatctttggtcaaaaaccatatgcatgcaacacattaaatcacttgatcgaaattgcggtatgtcgaag 24411934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 12571483 - 12571595
Alignment:
Q  220 atgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgacc 319  Q
    |||| |||| ||||||  ||||||||||||||  |||||| |||||||||||| ||||||||||||||| ||| ||||||||| |||||||| |||||||    
T  12571483 atgtcgaagtctgtatgctcttggtcgaaatcactttgcactttgcagcatgtcgaaataacccatctaccttgtcgaaaatagaatcatgagttcgacc 12571582  T
Q  320 aaatattttattt 332  Q
    |||||||| ||||    
T  12571583 aaatatttcattt 12571595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 35801895 - 35801761
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | |||| ||||||  ||||||||||||||  |||||| |||||| ||||| ||||||||||||||| ||| |||||||||    
T  35801895 ttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctaccttgtcgaaaata 35801796  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||| ||| ||||| ||||||||| |||| ||||    
T  35801795 taatcgtgagttcgatcaaatatttcatttttggt 35801761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 53019726 - 53019592
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| |||| ||||||  ||||||||||||||  |||||| |||||| ||||| |||||||||||| |  ||| |||||||||    
T  53019726 ttggtcgaaattgcggtgtgtcgaagtctgtatggtcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaata 53019627  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
     |||||||| ||||||||||||||| |||| ||||    
T  53019626 gaatcatgagttcgaccaaatatttcatttttggt 53019592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 39162933 - 39162799
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | |||| ||||||  ||||||||||||||  |||||| |||||| ||||| ||||||||| ||||  ||| |||||||||    
T  39162933 ttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataaccaatctgccttgtcgaaaata 39162834  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||| |||||| |||||||| |||| ||||    
T  39162833 taatcatgagttcgacaaaatatttcatttttggt 39162799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 5555716 - 5555582
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| |||||||| || ||| ||||  ||||| || |||||| |||||  |||||||||| |||||||| |||||||| |||||  ||| ||||||| |    
T  5555716 ttggtcgaaattgcagtgtgtcgaagtatgtatgttattggtcaaaatccatttgcattttacagcatgtcgaaataacacatctgccttgtcgaaaaca 5555617  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||| | ||||||||||||||| |||| ||||    
T  5555616 taatcattagttcgaccaaatatttcatttttggt 5555582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 55441017 - 55440918
Alignment:
Q  238 tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||||||||  |||| | |||||||||||| ||||||| ||||||  ||| ||||||| |||||| ||| ||||||||||||||| |||| ||||    
T  55441017 tcttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttggt 55440918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 46611928 - 46612057
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| ||||  || || || ||||||||||||  |||||| |||| ||| ||| |||||||| |||||  ||| ||||||| |    
T  46611928 ttggtcgaaattgcggtgtgtcgaagtatgcatgttattggtcgaaatccatttgcactttgtagcctgtcgaaataactcatctgccttatcgaaaaca 46612027  T
Q  303 taatcatgatttcgaccaaatattttattt 332  Q
    ||||||| | ||||||||||||||| ||||    
T  46612028 taatcataagttcgaccaaatatttcattt 46612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5555876 - 5555826
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttccta 51  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  5555876 aaactaccactaaatcctacagtctatattgaaagtagaaataacttccta 5555826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 338
Target Start/End: Original strand, 4947625 - 4947754
Alignment:
Q  209 gaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatca 308  Q
    ||||||||||| ||| |||| |||||| || |||||||||||   |||| | || |||||||||  ||||||| |||||  ||| || |||||||||| |    
T  4947625 gaaattgcggtgtgtcgaagtctgtatgttattggtcgaaattcctttggacttcgcagcatgtcaaaataactcatctgtcttgtcaaaaatataatta 4947724  T
Q  309 tgatttcgaccaaatattttatttgtggta 338  Q
    ||| |||||| |||||||| |||| |||||    
T  4947725 tgagttcgacaaaatatttcatttttggta 4947754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 338
Target Start/End: Original strand, 24778171 - 24778307
Alignment:
Q  202 cttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaat 301  Q
    |||||| |||||||  || ||| |||| |||||| || || |||||||||  ||| || |||||||||||| |||| ||  |||||   || || ||| |    
T  24778171 cttggtcgaaattgtagtgtgtcgaagtctgtatgttattagtcgaaatcccttttcactttgcagcatgtcgaaaaaaatcatctgcgttgtctaaatt 24778270  T
Q  302 ataatcatgatttcgaccaaatattttatttgtggta 338  Q
    |||||||| ||||||||||||||||| |||| |||||    
T  24778271 ataatcataatttcgaccaaatatttcatttttggta 24778307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 24412104 - 24412076
Alignment:
Q  23 tctaaattaaaagtagaaataacttccta 51  Q
    |||||||||||||||||||||||||||||    
T  24412104 tctaaattaaaagtagaaataacttccta 24412076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 126 - 281
Target Start/End: Complemental strand, 375574 - 375419
Alignment:
Q  126 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttg 225  Q
    |||| ||||||| |||||||| ||||||| ||||||||| || |||||||||||||||||||||| ||| || ||||||| | ||||||||||||||| |    
T  375574 tgcattccaattgtaacttcaaattatttatccttatctctgatcgaaaaccatatgcatgcaacgcattaaatcacttgatcgaaattgcggtatgtcg 375475  T
Q  226 aagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataac 281  Q
    ||   |||||| ||||||||||||||  |||||| |||||||||||| ||||||||    
T  375474 aaatatgtatactcttggtcgaaatctctttgcactttgcagcatgtcgaaataac 375419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 33545878 - 33545560
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcacttcaactttgtt 100  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||          ||||||||||||||    || |||||||||||| |||||    
T  33545878 aaactaccactaaatcctacggtttatattaaaagtagaaataacttccta----------agacactagaaaat----tccatgcacttcaacattgtt 33545793  T
Q  101 t-ctgc--catgctccactttgccttattgcactccaattataacttcagattatttctccttatctttggtcg-aaaaccatatgcatgcaacacatca 196  Q
    | | ||  || | | |||| |||||||||||||||||| | |||||| ||||||||||| ||| | |||||||| ||||||||||||||||||           
T  33545792 tgccgctacacgtttcactctgccttattgcactccaactgtaactttagattatttctacttgtgtttggtcgaaaaaccatatgcatgcaa------- 33545700  T
Q  197 agtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcg 296  Q
       |||||||| | |||||| ||||||  |||  |||||  ||||||||||||||  |||||| |||||||||||| ||||||||  || |  ||| |||    
T  33545699 ---cacttggtcggaattgcagtatgtcaaagtttgtatgctcttggtcgaaatccctttgcactttgcagcatgtcgaaataacatatatggcttgtcg 33545603  T
Q  297 aaaatataatcatgatttcgaccaaatattttatttgtggtat 339  Q
    |||   | ||||||||||||||||||||| |||||| ||||||    
T  33545602 aaatcttgatcatgatttcgaccaaatatcttatttttggtat 33545560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 265
Target Start/End: Complemental strand, 411142 - 410935
Alignment:
Q  61 aagacactagaaaataacttctatgcacttcaactttgtttc---tgccatgctccactttgccttattgcactccaattataacttcagattatttctc 157  Q
    ||||||||||||||||||||  ||||||| |||| ||||||    |  || ||||||||||||||||||  ||||||||| |||||| ||||||||  ||    
T  411142 aagacactagaaaataacttacatgcactccaaccttgtttgatgtcacacgctccactttgccttattaaactccaattgtaacttaagattattcgtc 411043  T
Q  158 cttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttg 257  Q
     || |||||||||| |||||||||||||||||||||| ||  |||||||| |||| || ||||||| ||||| | |||  ||||| | |||||| |||||    
T  411042 tttgtctttggtcgtaaaccatatgcatgcaacacattaaagcacttggtcgaaaatgtggtatgtcgaagcttatatgctcttgattgaaatctttttg 410943  T
Q  258 cattttgc 265  Q
    || |||||    
T  410942 cactttgc 410935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 338
Target Start/End: Complemental strand, 24800478 - 24800349
Alignment:
Q  209 gaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatca 308  Q
    ||||||| ||| ||| |||| |||||| || ||| ||||||||  ||| || |||||||||||| |||||||||||| |  ||| |||||||||||||||    
T  24800478 gaaattgtggtgtgtcgaagtctgtatgttattgatcgaaatccctttacactttgcagcatgtcgaaataacccatttgccttgtcgaaaatataatca 24800379  T
Q  309 tgatttcgaccaaatattttatttgtggta 338  Q
    ||| ||||||||||||||||||||||||||    
T  24800378 tgagttcgaccaaatattttatttgtggta 24800349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 332
Target Start/End: Complemental strand, 12231062 - 12230931
Alignment:
Q  201 acttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaa 300  Q
    |||| ||||||| ||| | |||| |||| |||||| |||||||||||||||  |||||| |||||||||||| |||||||| |||||  ||| |||||||    
T  12231062 actttgttgaaaatgcagcatgtcgaagtctgtatgttcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaa 12230963  T
Q  301 tataatcatgatttcgaccaaatattttattt 332  Q
    || ||| |||| ||||||||||||||||||||    
T  12230962 tagaattatgagttcgaccaaatattttattt 12230931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24800662 - 24800576
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgca 87  Q
    ||||||||||||||| |||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  24800662 aaactaccactaaattctacggtctagatttaaaatagaaataacttcttataacttcctaagacactataaaataacttccatgca 24800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24801644 - 24801556
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||  |||||||||||||||||  |||||||    
T  24801644 aaactaccactaaatcctacggtctagattaaaaatataaataacttcttataacttcctagaacactagaaaataactttcatgcact 24801556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33327833 - 33327745
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| | |||| ||||||||| |||| |||||||    
T  33327833 aaactaccactaaatactacgatctatattaaaagtagaaataacttcctataacttcccatgacattagaaaatatcttccatgcact 33327745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 33327656 - 33327525
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatat--tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaa 300  Q
    |||||||||||||| |||||| |||| ||||||||  | ||| ||||||||  |||||| |||||||||||| ||||||||| || || ||| | |||||    
T  33327656 ttggttgaaattgccgtatgtcgaagtctgtatatgttattgatcgaaatccctttgcactttgcagcatgtcgaaataacctatttaccttgttgaaaa 33327557  T
Q  301 tataatcatgatttcgaccaaatattttattt 332  Q
    || |||||||| ||||||||||||||| ||||    
T  33327556 tagaatcatgagttcgaccaaatatttcattt 33327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 31518559 - 31518498
Alignment:
Q  28 attaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||||||||||||||||| ||||||||||   |||||||||| |||||||    
T  31518559 attaaaagtagaaataacttcctataactttctaagacactgagaaataacttccatgcact 31518498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12231376 - 12231326
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttccta 51  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||||    
T  12231376 aaactaacactaaatcctacagtctatattgaaagtagaaataacttccta 12231326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 24801466 - 24801338
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| |||  |||||| || ||||| || |||  |||||| |||||  ||||| |||||||| |||||  ||| ||| |||||    
T  24801466 ttggtcgaaattgcggtgtgtcgaaatctgtatgttattggttgatatccctttgcactttgcttcatgtcgaaataacacatctgccttatcg-aaata 24801368  T
Q  303 taatcatgatttcgaccaaatattttattt 332  Q
    ||||||||  || |||||||||||| ||||    
T  24801367 taatcatgggttagaccaaatatttcattt 24801338  T

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Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 24574184 - 24574272
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  24574184 aaactaccactaaatattacggtctatattaaaagtagaaataacttcctataacttcctaagacactagaaaatatcttccatgcact 24574272  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27614077 - 27614164
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  27614077 aaactaccactaaattctacggtctat-ttaaaagtagaaataacttcctataacctcctaagacactagaaaataacttccatgcact 27614164  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10374745 - 10374655
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataa-cttctatgcactt 90  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||    
T  10374745 aaactaccactaaatcctaaggtctatattaaaagtagaaataacttcctataaccttctaagacactagaaaataatcttcaatgcactt 10374655  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 11105434 - 11105563
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| |||| |||| | || ||||||||||||  |||||| |||||||||||| |||||||| |||||  ||| ||||||| |    
T  11105434 ttggtcgaaattgcggtgtgtcgaagtctgtctgttattggtcgaaatccctttgcactttgcagcatgtcgaaataactcatctgccttgtcgaaaaga 11105533  T
Q  303 taatcatgatttcgaccaaatattttattt 332  Q
    ||||||||||||||||||||||||| ||||    
T  11105534 taatcatgatttcgaccaaatatttcattt 11105563  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36561813 - 36561728
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgc 86  Q
    |||||||||||||||| || |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  36561813 aaactaccactaaatcatatggtccatattaaaagtagaaataacttcctataacttccaaagacactagaaaataacttccatgc 36561728  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10377317 - 10377241
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataa 77  Q
    ||||||||||||||| ||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10377317 aaactaccactaaattctaagatctatattaaaagtagaaataacttcctataacctcctaagacactagaaaataa 10377241  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 337
Target Start/End: Original strand, 27614260 - 27614387
Alignment:
Q  210 aaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcat 309  Q
    |||||| ||||||| ||||  ||||| || ||||||||||||  |||||| ||| |||| ||| ||||||||||||||  ||| ||||||| ||||||||    
T  27614260 aaattgtggtatgtcgaagtatgtatgttattggtcgaaatccatttgcactttacagcctgtcgaaataacccatctgccttgtcgaaaacataatcat 27614359  T
Q  310 gatttcgaccaaatattttatttgtggt 337  Q
    || |||||||||||||||||||| ||||    
T  27614360 gagttcgaccaaatattttatttttggt 27614387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 203 - 326
Target Start/End: Original strand, 19259286 - 19259409
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||  |||| |||| | || ||||||||||||| |||||| ||||| |||||| ||||||||||||||  ||| ||||||| |    
T  19259286 ttggtcgaaattgcggtgtggcgaagtctgtcttttattggtcgaaatcgctttgcactttgcggcatgtcgaaataacccatctgccttgtcgaaaaca 19259385  T
Q  303 taatcatgatttcgaccaaatatt 326  Q
    ||||||||| ||||| ||||||||    
T  19259386 taatcatgagttcgatcaaatatt 19259409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22615640 - 22615552
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttcctataacttcctaagacactagaaaataacttctatgcact 89  Q
    ||||||||||| ||||||||||| |  |||| || ||||||||||||| |||||| |||||||||||| |||||||||||| |||||||    
T  22615640 aaactaccactgaatcctacggtttggattacaaatagaaataacttcttataacgtcctaagacacttgaaaataacttccatgcact 22615552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 10377140 - 10377006
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| ||||  ||||| || ||||||||||||  |||||| |||||||| ||| |||||||| |||||  ||| ||||  |||    
T  10377140 ttggtcgaaattgcggtgtgtcgaagtatgtatgttattggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttatcgacgata 10377041  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
     |||||||| ||||||||||||||| |||| ||||    
T  10377040 gaatcatgaattcgaccaaatatttcatttttggt 10377006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 337
Target Start/End: Complemental strand, 10374590 - 10374463
Alignment:
Q  210 aaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcat 309  Q
    |||||||||| ||| ||||  ||||| || |||||||||||   |||||| |||||||| ||| |||||||||||| |  ||| ||||  ||| ||||||    
T  10374590 aaattgcggtgtgtcgaagtatgtatgttattggtcgaaatttatttgcactttgcagcctgtcgaaataacccatttgccttatcgacgatagaatcat 10374491  T
Q  310 gatttcgaccaaatattttatttgtggt 337  Q
    || ||||||||||||||| |||| ||||    
T  10374490 gaattcgaccaaatatttcatttttggt 10374463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 36558674 - 36558553
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| |||| |||| | || ||||||||||||  |||||| |||||| ||||| ||||||||| ||||  ||| |||   | |    
T  36558674 ttggtcgaaattgcggtgtgtcgaagtctgtttgttattggtcgaaatccctttgcactttgcaacatgttgaaataaccaatctgccttgtcg---aca 36558578  T
Q  303 taatcatgatttcgaccaaatattt 327  Q
    ||||||||| |||||||||||||||    
T  36558577 taatcatgagttcgaccaaatattt 36558553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 337
Target Start/End: Original strand, 24574368 - 24574494
Alignment:
Q  210 aaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcat 309  Q
    |||||||||| ||| ||||  ||||| || |||||| |||||  |||||| |||| ||| | | |||||||| ||| |  ||| ||||||| ||||||||    
T  24574368 aaattgcggtgtgtcgaaga-tgtatgttattggtcaaaatctatttgcactttgtagcctatcgaaataacacatatgccttgtcgaaaacataatcat 24574466  T
Q  310 gatttcgaccaaatattttatttgtggt 337  Q
     | |||||||||||||||||||| ||||    
T  24574467 tagttcgaccaaatattttatttttggt 24574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 197863 - 197772
Alignment:
Q  130 ctccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacatcaagtcacttggttgaaattgcggtat 221  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  197863 ctccaattgaaacttcaaattatttctccttgtctttggtcgaaaaccatatgcatgcaacacattaagtcacttggtcgaaattgtggtat 197772  T

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Target: scaffold0007; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 197761 - 197675
Alignment:
Q  261 tttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggtatgatcagatat 349  Q
    |||||||||||| |||| |||||||||   || ||| |||||||||||||| |||||||||||||||||||| |||||| | |||||||    
T  197761 tttgcagcatgtcgaaagaacccatct-ggttgtcg-aaatataatcatgacttcgaccaaatattttatttttggtattaacagatat 197675  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 4588404 - 4588270
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| | | ||||  |||||| ||||||||||||||  |||||| |||||| ||||| ||||||||||||||  ||| |||||||||    
T  4588404 ttggtcgaaattgcggtgtatcgaagtatgtatactcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaata 4588305  T
Q  303 taatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||| ||||||||||||||| |||| ||||    
T  4588304 taatcatgagttcgaccaaatatttcatttttggt 4588270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 218533 - 218404
Alignment:
Q  203 ttggttgaaattgcggtatgttgaagcctgtatattcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaata 302  Q
    ||||| ||||||||||| ||| |||| |||| | || ||||||||||||  |||||| |||||| ||||| ||||||||||||||  ||| | ||||| |    
T  218533 ttggtcgaaattgcggtgtgtcgaagtctgtcttttattggtcgaaatccctttgcactttgcaacatgtcgaaataacccatctgccttgttgaaaaca 218434  T
Q  303 taatcatgatttcgaccaaatattttattt 332  Q
    ||||||||| ||||||||||||||| ||||    
T  218433 taatcatgagttcgaccaaatatttcattt 218404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 218700 - 218650
Alignment:
Q  1 aaactaccactaaatcctacggtctaaattaaaagtagaaataacttccta 51  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  218700 aaactaccactaaatcctacggtctatatttaaagtagaaataacttccta 218650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 11297 - 11396
Alignment:
Q  238 tcttggtcgaaatcgttttgcattttgcagcatgtggaaataacccatctaacttttcgaaaatataatcatgatttcgaccaaatattttatttgtggt 337  Q
    ||||||||||||||  |||| | |||||||||||| ||||||| ||||||  ||| || |||| |||||| ||| ||||||||||||||| |||| ||||    
T  11297 tcttggtcgaaatccctttgtactttgcagcatgtcgaaataatccatctgccttgtcaaaaacataatcgtgagttcgaccaaatatttcatttttggt 11396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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