View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_11 (Length: 362)
Name: NF1912_low_11
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_11 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 1900032 - 1899687
Alignment:
| Q |
17 |
aatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgctg |
116 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1900032 |
aatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcacttttccaactctataggcacagatttttgtcttcttctctttgctg |
1899933 |
T |
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| Q |
117 |
cttaggcattggttattaaagcttagtattgcttggatttgaagagtatagggagtnnnnnnngttcgtgggaaatgaccatattgccttgcccccacct |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |
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| T |
1899932 |
cttaggcattggttattaaagcttagtattgtttggatttgaagagtatagggagtagaaaaagttcgtgggaaatgaccatattaccatgcccccacct |
1899833 |
T |
|
| Q |
217 |
ccaaagaaaaaaggaaatgttttagtttttacatttgtgtaacaaaattgtaagttgagggcacacgagttcatgtcatgatacgagttttcattttgat |
316 |
Q |
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|||||||||||||||||||| |||||||| |||||| ||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1899832 |
ccaaagaaaaaaggaaatgtgttagttttaacatttctgtaacaaaattgcaaattgagggcacacaagttcattgcatgatacgagttttcattttgat |
1899733 |
T |
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| Q |
317 |
cgtttgttgagtccccacccttcattattttttatgttgcgtgcaa |
362 |
Q |
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||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
1899732 |
cgtttgttgagccaccacccctcattattttttatgttgcgtgcaa |
1899687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 1909478 - 1909133
Alignment:
| Q |
17 |
aatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgctg |
116 |
Q |
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| T |
1909478 |
aatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcacttttccaactctataggcacagatttttgtcttcttctctttgctg |
1909379 |
T |
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| Q |
117 |
cttaggcattggttattaaagcttagtattgcttggatttgaagagtatagggagtnnnnnnngttcgtgggaaatgaccatattgccttgcccccacct |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |
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| T |
1909378 |
cttaggcattggttattaaagcttagtattgtttggatttgaagagtatagggagtagaaaaagttcgtgggaaatgaccatattaccatgcccccacct |
1909279 |
T |
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| Q |
217 |
ccaaagaaaaaaggaaatgttttagtttttacatttgtgtaacaaaattgtaagttgagggcacacgagttcatgtcatgatacgagttttcattttgat |
316 |
Q |
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| T |
1909278 |
ccaaagaaaaaaggaaatgtgttagttttaacatttctgtaacaaaattgcaaattgagggcacacaagttcattgcatgatacgagttttcattttgat |
1909179 |
T |
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| Q |
317 |
cgtttgttgagtccccacccttcattattttttatgttgcgtgcaa |
362 |
Q |
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||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
1909178 |
cgtttgttgagccaccacccctcattattttttatgttgcgtgcaa |
1909133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 1893115 - 1892771
Alignment:
| Q |
17 |
aatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgctg |
116 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893115 |
aatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgctg |
1893016 |
T |
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| Q |
117 |
cttaggcattggttattaaagcttagtattgcttggatttgaagagtatagggagtnnnnnnngttcgtgggaaatgaccatattgccttgcccccacct |
216 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||| || || ||||||| |
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| T |
1893015 |
cttaggcattggttattaaagcttagtattgtttgggtttgaagagtatagggagt-aaaaaagttcttgggaaatgaccatattaccatggccccaccc |
1892917 |
T |
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| Q |
217 |
ccaaagaaaaaaggaaatgttttagtttttacatttgtgtaacaaaattgtaagttgagggcacacgagttcatgtcatgatacgagttttcattttgat |
316 |
Q |
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|||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
1892916 |
ccaaagaaaaaaggaaatgtgttggtttttacatctgtgtaacaaaattgcaagttgagggcacacaagttcatggcatgatacgagttttcattttgat |
1892817 |
T |
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| Q |
317 |
cgtttgttgagtccccacccttcattattttttatgttgcgtgcaa |
362 |
Q |
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| T |
1892816 |
tgtttgttgagccaccacccttcattatcttgtacgttgcgtgcaa |
1892771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 2930227 - 2930421
Alignment:
| Q |
17 |
aatgttgccttgt-gctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgct |
115 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2930227 |
aatgttgccttgttgctcgtttctagatgtcttgctttggacagcttcgacgcacgtttccaactctgtaggcacagatttttgtcttcttctctttgtt |
2930326 |
T |
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| Q |
116 |
gcttaggcattggttattaaagcttagtattgcttggatttgaagagtatagggagtnnnnnnngttcgtgggaaatgaccatattgccttgccc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||| |
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| T |
2930327 |
gcttaggcattggttattaaagcttagtattgcttggatttgaagagtatagggagtaaaaaaggttcgtgagaaatgaccatattaccatgccc |
2930421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 127 - 362
Target Start/End: Original strand, 2935569 - 2935800
Alignment:
| Q |
127 |
ggttattaaagcttagtattgcttggatttgaagagtatagggagtnnnnnnngttcgtgggaaatgaccatattgccttgcccccacctccaaagaaaa |
226 |
Q |
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||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||| | | ||||||| |||||||||| |
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| T |
2935569 |
ggttattaaagcttagtattgtttgggtttaaagagtatagggagtaaaaaa-gttcgtgggaaatgaccatattac---gaccccacccccaaagaaaa |
2935664 |
T |
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| Q |
227 |
aaggaaatgttttagtttttacatttgtgtaacaaaattgtaagttgagggcacacgagttcatgtcatgatacgagttttcattttgatcgtttgttga |
326 |
Q |
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|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||| |
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| T |
2935665 |
aaggaaatgtgttggtttttacatttgtgtaacaaaattgcaagttgagggcacacgagttcatggcatgatacaagttttcattttgattgattgttga |
2935764 |
T |
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| Q |
327 |
gtccccacccttcattattttttatgttgcgtgcaa |
362 |
Q |
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| | |||||||||||||| || || ||||||||||| |
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| T |
2935765 |
gccaccacccttcattatcttgtacgttgcgtgcaa |
2935800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 2935279 - 2935398
Alignment:
| Q |
17 |
aatgttgccttgt-gctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgct |
115 |
Q |
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||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| | |
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| T |
2935279 |
aatgtcgccttgttgctcgtttctagatgtcttgctttggacagcttcgatgcacttttcccactctgtaggcacaaatttttgtcttcttctctttgat |
2935378 |
T |
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| Q |
116 |
gcttaggcattggttattaa |
135 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2935379 |
gcttaggcattggttattaa |
2935398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 2930469 - 2930543
Alignment:
| Q |
288 |
catgtcatgatacgagttttcattttgatcgtttgttgagtccccacccttcattattttttatgttgcgtgcaa |
362 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||| ||||| |
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| T |
2930469 |
catggcatgatacgagttttcattttgatcgtttgtcgagccaccacccttcattattttgtatgttgcctgcaa |
2930543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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