View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_15 (Length: 332)
Name: NF1912_low_15
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 51 - 314
Target Start/End: Original strand, 13302988 - 13303251
Alignment:
| Q |
51 |
cttccttcttctgattgataagttgttgagttagaagacataagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtc |
150 |
Q |
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| T |
13302988 |
cttccttcttctggttggggagttgttgagttagaagacataagtaattgactgatttgatacttgagttgtttattaggagtaaacaaaccgtaatgtc |
13303087 |
T |
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| Q |
151 |
tctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
250 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303088 |
tctctatttcagcaggtccttttttattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
13303187 |
T |
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| Q |
251 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaa |
314 |
Q |
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| T |
13303188 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaa |
13303251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 51 - 314
Target Start/End: Complemental strand, 13431982 - 13431719
Alignment:
| Q |
51 |
cttccttcttctgattgataagttgttgagttagaagacataagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtc |
150 |
Q |
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| T |
13431982 |
cttccttcttctggttggggagttgttgagttagaagacataagtaattgactgatttgatacttgagttgtttattaggagtaaacaaaccgtaatgtc |
13431883 |
T |
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| Q |
151 |
tctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
250 |
Q |
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| T |
13431882 |
tctctttttcagcaggtccttttttattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
13431783 |
T |
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| Q |
251 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431782 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaa |
13431719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 29288878 - 29288674
Alignment:
| Q |
105 |
atttgatacttgagctctttgttaggagtaaacaaaccataatgtctctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataag |
204 |
Q |
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| T |
29288878 |
atttgatatttgatctgtttatcaggagtaaacaaaccatagtgtctttcagtttcatctggtcctttattattttcatcaaacatggcaaataagtaag |
29288779 |
T |
|
| Q |
205 |
tttctaatgcttgattaggtctactaatagtcccattagaaacatgcttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatc |
304 |
Q |
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| T |
29288778 |
tctctaatgcttgattaggcctattaggagtcccagtaatcacatgcttaatcaaattctcatggtagatttgtgcattttcaattgatgcagcaacacc |
29288679 |
T |
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| Q |
305 |
accat |
309 |
Q |
| |
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||||| |
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| T |
29288678 |
accat |
29288674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 13302941 - 13302983
Alignment:
| Q |
46 |
atattcttccttcttctgattgataagttgttgagttagaaga |
88 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||| |
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| T |
13302941 |
atattcctccttcttctgattgaggagttgttgagttagaaga |
13302983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 13432029 - 13431987
Alignment:
| Q |
46 |
atattcttccttcttctgattgataagttgttgagttagaaga |
88 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||| |
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| T |
13432029 |
atattcctccttcttctgattgaggagttgttgagttagaaga |
13431987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 21286603 - 21286826
Alignment:
| Q |
91 |
taagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtctctctgtttcagcaggtcctttttgattttcatcgaacat |
190 |
Q |
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||||||| |||||||||||||||||||| | ||| | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21286603 |
taagtaattgactgatttgatacttgagttgtttatcaggtgtaaataaaccataatacctctctgtttcagcaggtcctttttgattttcatcaaacat |
21286702 |
T |
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| Q |
191 |
ggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatgcttaattaaattctcatagtagatttgtgcattttcaact |
290 |
Q |
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|||||||||||||||||| |||||||||||||| | | || |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
21286703 |
ggcaaataaataagtttccaatgcttgattaggccgattaggagtcccgacagaaacatgcttaattaaattctcgtggtagatttgtgcattttcaact |
21286802 |
T |
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| Q |
291 |
gatgcagcaacatcaccatgagaa |
314 |
Q |
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|||||| ||||||||||||||||| |
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| T |
21286803 |
gatgcaccaacatcaccatgagaa |
21286826 |
T |
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