View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_17 (Length: 317)
Name: NF1912_low_17
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 33438395 - 33438109
Alignment:
| Q |
16 |
aatatattgggagatttgaaaacgaaatttaagctgtaaaattaactcatttacaggttacccatttaatgtttatttttt-gttgctaatagcacattt |
114 |
Q |
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| T |
33438395 |
aatatattgggggatttgaaaacgaaatttaagctgtaaaattaactcatttacaggttacccatttaatgtttatttttttgttaataatagcacattt |
33438296 |
T |
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| Q |
115 |
aatgttgattgatgagttttacatttgctttcgaaaacaagttgtacatttaatttttgcttttcatatccatgcctatgggtccttc-nnnnnnnnntc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33438295 |
aatgttgattgatgagttttacatttgctttcgaaaacaagttgtacatttaatttttgcttttcatatccatgcctatgggtccttcaacaaaaatatc |
33438196 |
T |
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| Q |
214 |
catgcctatgggaaagataaacacatactagtaagggttgaattgaaaggcaaaagagaaaagccaaattttttatttgagagtgat |
300 |
Q |
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| T |
33438195 |
catgcctatgggaaagataaacacatactagtaagggttgaattgaaaggcaaaagagaaaagccaaattttttatttgagagtgat |
33438109 |
T |
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