View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_18 (Length: 277)

Name: NF1912_low_18
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_18
NF1912_low_18
[»] scaffold0091 (3 HSPs)
scaffold0091 (12-127)||(29057-29172)
scaffold0091 (217-269)||(24720-24772)
scaffold0091 (217-269)||(28917-28969)
[»] scaffold0218 (2 HSPs)
scaffold0218 (12-126)||(14378-14492)
scaffold0218 (217-269)||(14237-14289)
[»] chr3 (10 HSPs)
chr3 (12-124)||(16642300-16642412)
chr3 (12-125)||(4712800-4712913)
chr3 (12-127)||(14062778-14062893)
chr3 (12-127)||(14055037-14055152)
chr3 (22-123)||(13926858-13926960)
chr3 (217-269)||(16642133-16642185)
chr3 (217-269)||(4713007-4713059)
chr3 (227-269)||(14055242-14055284)
chr3 (224-269)||(14063000-14063045)
chr3 (228-266)||(14481800-14481838)
[»] chr6 (4 HSPs)
chr6 (12-127)||(14989375-14989490)
chr6 (12-125)||(14980263-14980376)
chr6 (217-269)||(14980470-14980522)
chr6 (90-127)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (12-127)||(51658662-51658777)
chr1 (19-127)||(13882243-13882351)
chr1 (18-112)||(1567069-1567166)
chr1 (224-269)||(13882481-13882526)
chr1 (224-266)||(51658870-51658912)
[»] chr7 (10 HSPs)
chr7 (12-127)||(48376787-48376902)
chr7 (12-127)||(16060512-16060627)
chr7 (22-127)||(4531759-4531865)
chr7 (217-269)||(16060374-16060426)
chr7 (224-269)||(9080206-9080251)
chr7 (90-127)||(9080338-9080375)
chr7 (224-269)||(16069022-16069067)
chr7 (217-269)||(48376637-48376689)
chr7 (66-112)||(37945878-37945924)
chr7 (95-127)||(37946032-37946064)
[»] chr8 (6 HSPs)
chr8 (12-127)||(23658526-23658649)
chr8 (12-127)||(23657751-23657884)
chr8 (218-269)||(23657648-23657699)
chr8 (218-269)||(23658423-23658474)
chr8 (22-57)||(29293929-29293964)
chr8 (236-269)||(17862270-17862303)
[»] scaffold1269 (1 HSPs)
scaffold1269 (12-104)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (52-127)||(130795-130870)
scaffold0003 (217-269)||(130633-130685)
[»] chr2 (2 HSPs)
chr2 (22-127)||(23656470-23656576)
chr2 (224-268)||(23907788-23907832)
[»] scaffold0319 (1 HSPs)
scaffold0319 (12-81)||(13570-13639)
[»] scaffold0063 (2 HSPs)
scaffold0063 (217-269)||(28466-28518)
scaffold0063 (89-127)||(28342-28380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (217-264)||(18109-18156)
[»] chr4 (2 HSPs)
chr4 (36-106)||(3576240-3576311)
chr4 (236-269)||(19728471-19728504)
[»] scaffold1043 (1 HSPs)
scaffold1043 (224-269)||(1439-1484)
[»] chr5 (3 HSPs)
chr5 (224-269)||(25756795-25756840)
chr5 (224-269)||(25790961-25791006)
chr5 (224-266)||(24832211-24832253)


Alignment Details
Target: scaffold0091 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 29172 - 29057
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  29072 tgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 24772 - 24720
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  24772 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 28969 - 28917
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  28969 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
Q  112 tgttagtgatgatga 126  Q
    |||||||||||||||    
T  14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 14289 - 14237
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| || ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14289 tgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
Q  112 tgttagtgatgat 124  Q
    |||||||||||||    
T  16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 14062778 - 14062893
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||| ||||||||    
T  14062878 tgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 14055037 - 14055152
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
Q  112 tgttagtgatgatgag 127  Q
    |||||||||| |||||    
T  14055137 tgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||| ||||||||||||| |  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  121 tga 123  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 16642185 - 16642133
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16642185 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 4713007 - 4713059
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||||    
T  4713007 tgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 14055242 - 14055284
Alignment:
Q  227 aatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  14055242 aatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 14063000 - 14063045
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  14063000 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 14481800 - 14481838
Alignment:
Q  228 atgacgacgtataattatgatgatgacttgaatgatgat 266  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  14481800 atgacgatgtataattatgatgatgatttgaatgatgat 14481838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 14989375 - 14989490
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  14989475 tgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
Q  112 tgttagtgatgatg 125  Q
    ||||||||||||||    
T  14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 14980470 - 14980522
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  14980470 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 51658662 - 51658777
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  51658762 tgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  19 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  119 gatgatgag 127  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  18 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 13882481 - 13882526
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13882481 gagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 51658870 - 51658912
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgat 266  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  51658870 gagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 48376902 - 48376787
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
Q  112 tgttagtgatgatgag 127  Q
    ||||| ||||||||||    
T  48376802 tgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 16060627 - 16060512
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 111  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
Q  112 tgttagtgatgatgag 127  Q
    ||||||||||||||||    
T  16060527 tgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| |||||||||||||||||||||||| |  |||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  121 tgatgag 127  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 16060426 - 16060374
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16060426 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 9080251 - 9080206
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080251 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  90 atgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 16069022 - 16069067
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069022 gagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 37945878 - 37945924
Alignment:
Q  66 tatatatgtaattaaataaatacgatgagaaatgataatgtttatat 112  Q
    ||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  37945878 tatatatgtaaataaataaatacgataagaaatgacgatgtttatat 37945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  95 aaatgataatgtttatatgttagtgatgatgag 127  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 23658649 - 23658526
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatata--------tgtaattaaataaatacgatgagaaatgataa 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
Q  104 tgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||    
T  23658549 tgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 23657884 - 23657751
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatat------------------gtaattaaataaatacgatga 93  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatga 23657785  T
Q  94 gaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||| ||||||||||||||||||||||||||||    
T  23657784 gaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  218 gactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  218 gactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 17862270 - 17862303
Alignment:
Q  236 gtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||||||||||||| |||||||||||||||    
T  17862270 gtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 93 - 1
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataat 104  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  52 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 130685 - 130633
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  130685 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 120  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  121 tgatgag 127  Q
    | |||||    
T  23656570 taatgag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 23907832 - 23907788
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgt 268  Q
    |||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907832 gagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 13570 - 13639
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaa 81  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaaa 13639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 28466 - 28518
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| ||||    
T  28466 tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  89 gatgagaaatgataatgtttatatgttagtgatgatgag 127  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 18109 - 18156
Alignment:
Q  217 tgactacgagaatgacgacgtataattatgatgatgacttgaatgatg 264  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18109 tgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  36 atgtgacgaagagtgatgacgaa-gatattatatatatgtaattaaataaatacgatgagaaatgataatgt 106  Q
    ||||||||||||||||||||||  ||| ||||||| |||||  |||||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 19728471 - 19728504
Alignment:
Q  236 gtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||||||||||||| |||||||||||||||    
T  19728471 gtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 1439 - 1484
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||    
T  1439 gagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 25756795 - 25756840
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756795 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 25791006 - 25790961
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgatgtc 269  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791006 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 24832211 - 24832253
Alignment:
Q  224 gagaatgacgacgtataattatgatgatgacttgaatgatgat 266  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  24832211 gagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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