View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_19 (Length: 252)
Name: NF1912_low_19
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14923301 - 14923068
Alignment:
| Q |
1 |
cctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaagcaaattactaaaagattaagaatttacaattgctacgtagctatagatat |
100 |
Q |
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| T |
14923301 |
cctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaagcaaattactaaaagattaagaatttacaattgctacatagctatagatat |
14923202 |
T |
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| Q |
101 |
ttaaggggaaagnnnnnnnngatatagctatagatggataaatgaattagtaattaaaatagtatgagagtttaaaattgacaaatagtgctcgagtcaa |
200 |
Q |
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| T |
14923201 |
ttgaggggaaagaaaaaaaagatatagctatagatgaataaatgaattag---ttaaaatcgtatgagagtttaaaattgacaaatagtgctcgagtcaa |
14923105 |
T |
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| Q |
201 |
aagtttaaaatatttcaatttcctttgactttgtgat |
237 |
Q |
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| T |
14923104 |
aagtttaaaatatttcaatttcctttgactttgtgat |
14923068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 14914853 - 14914630
Alignment:
| Q |
2 |
ctttatcaatatgttgtgtcgtattaagaaagatgtacagattgctaa-gcaaattactaaaagattaagaatttacaattgctacgtagctatagatat |
100 |
Q |
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| T |
14914853 |
ctttatcaatatgtcgtgtcgtattaagcaagatgtacatattgctaaagcgaattactaaaaaattaagaatttaca---------tagctatagatgt |
14914763 |
T |
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| Q |
101 |
ttaagggga----aagnnnnnnnn--gatatagctatagatggataaatgaattagtaattaaaatagtatgagagtttaaaattgacaaatagtgctcg |
194 |
Q |
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| T |
14914762 |
ttgagggaagaaaaagaaaaaaaaaagatacagctctagatggatcaatgaattggt---taaaatagtatgagagtttaaaattgcttaatagtgctcg |
14914666 |
T |
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| Q |
195 |
agtcaaaagtttaaaatatttcaatttcctttgact |
230 |
Q |
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| T |
14914665 |
agtcaaaagtttaaaatatttcaatttcccttgact |
14914630 |
T |
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