View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_2 (Length: 743)

Name: NF1912_low_2
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_2
NF1912_low_2
[»] chr5 (6 HSPs)
chr5 (432-604)||(11336209-11336381)
chr5 (12-259)||(11335667-11335917)
chr5 (263-421)||(11335995-11336153)
chr5 (499-604)||(43379448-43379553)
chr5 (499-604)||(43378572-43378677)
chr5 (18-61)||(24136585-24136630)
[»] chr6 (4 HSPs)
chr6 (565-604)||(13208225-13208264)
chr6 (544-602)||(3163534-3163592)
chr6 (445-487)||(10740746-10740788)
chr6 (499-604)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (551-598)||(3466658-3466705)
chr2 (432-497)||(8985740-8985805)
chr2 (551-604)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (513-579)||(3582072-3582138)
[»] chr7 (2 HSPs)
chr7 (551-604)||(35752377-35752430)
chr7 (432-497)||(46964298-46964363)
[»] chr4 (1 HSPs)
chr4 (432-497)||(16869676-16869741)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 6e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 432 - 604
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  432 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 531  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  532 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 604  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 11335667 - 11335917
Alignment:
Q  12 gagatgaacaaccaattaaccaaacacaaacacataaacacacgaagactnnnnnnnctcacaaacggattactagactcaagtaaataaaccnnnnnnn 111  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||||||       |||||||||||||||||||||||| |||||||||||           
T  11335667 gagacgaacaaccaattaaccaaacacaaatacagaaacacacgaagactaaaaaaactcacaaacggattactagactcacgtaaataaaccaaaaaaa 11335766  T
Q  112 ggagatcagcccaaacataaaactcaagcaaaaagaaccaccaaccttgattaaattaaaagaataatgaa---aaggagaataatcggatgcaaatctg 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| ||||    
T  11335767 ggagatcggcccaaacataaaactcaagcaaaaagaaccaccaaccttgattaaattaaaagaacaatgaaaagaagaagaataatcggctgcaagtctg 11335866  T
Q  209 actccaaaatccacaaacaaaatatgattcctctatatattcccaattatg 259  Q
    ||||||||| ||||||||||||| | ||||||| |||||||||||||||||    
T  11335867 actccaaaacccacaaacaaaatctaattcctccatatattcccaattatg 11335917  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 263 - 421
Target Start/End: Original strand, 11335995 - 11336153
Alignment:
Q  263 aatccaaatgtagccataaaagcaaacaacnnnnnnnggcaatttcaaatccaccaacatcagtgtttcaacaaagagtcaatcggagtcaaataannnn 362  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||        
T  11335995 aatccaaatgtagccataaaagcaaacaacacaaaaaggcaatttcaaatccaccaacaacattgtttcaacaaagagtcaatcggagtcaaataatttt 11336094  T
Q  363 nnnagcgacgaatgcacaataaccaacaaatacaatcagtcttcaatcaagataaagat 421  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11336095 tttagcgacgaatgcacaataaccaacaaatataatcagtcttcaatcaaaataaagat 11336153  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 499 - 604
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  499 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 598  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  599 ggtttg 604  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 604
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  499 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 598  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  599 ggtttg 604  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24136630 - 24136585
Alignment:
Q  18 aacaaccaattaaccaaacacaaacaca--taaacacacgaagact 61  Q
    ||||||||||||||||||||||||||||   |||||||||||||||    
T  24136630 aacaaccaattaaccaaacacaaacacaatgaaacacacgaagact 24136585  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 604
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  565 gtgacaaacataaaagcaagggttaggattaaaaggtttg 604  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 602
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  544 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 602  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 487
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  445 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 487  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 604
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  499 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 598  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  599 ggtttg 604  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 598
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  551 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 598  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  432 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 497  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  551 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 604  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 579
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  513 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 579  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  551 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 604  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 497
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  432 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 497  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  432 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 497  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

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