View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_22 (Length: 243)
Name: NF1912_low_22
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33438372 - 33438609
Alignment:
| Q |
1 |
cgttttcaaatctcccaatatattgttcaagttgttttgacttccaagcattgaatcaaacacgagttggccatttagggcaaacgttaatttaatttgt |
100 |
Q |
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| T |
33438372 |
cgttttcaaatcccccaatatattgatcaagttgttttgacttccaagcattgaatcaaacacgagttggccatttagggcaaacgttaa-----tttgt |
33438466 |
T |
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| Q |
101 |
gtggataccacatactactatatgaaagcaaccaaaccttctctagtcctaatgatatattggccaaacgtttgtgtggatactacataataatagtatg |
200 |
Q |
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| T |
33438467 |
gtggataccacatactactatatgaaagcaaccaaaccttctctagtcctaatgatatattggccaaacgtttgtgtggatactacataataatagtatg |
33438566 |
T |
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| Q |
201 |
atatttgctgctacacaagatccagtttttaatagtatgatga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33438567 |
atatttgctgctacacaagatccagtttttaatagtatgatga |
33438609 |
T |
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