View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_23 (Length: 237)

Name: NF1912_low_23
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_23
NF1912_low_23
[»] chr1 (7 HSPs)
chr1 (1-220)||(36730002-36730222)
chr1 (1-157)||(20062478-20062636)
chr1 (1-135)||(20059475-20059611)
chr1 (13-159)||(26049884-26050032)
chr1 (32-82)||(30786117-30786167)
chr1 (32-82)||(46888713-46888763)
chr1 (33-82)||(46886692-46886741)
[»] chr5 (7 HSPs)
chr5 (1-160)||(20507500-20507660)
chr5 (1-160)||(21947520-21947680)
chr5 (1-146)||(17186170-17186317)
chr5 (20-120)||(10734645-10734747)
chr5 (32-71)||(31813732-31813771)
chr5 (34-76)||(41636881-41636923)
chr5 (110-159)||(31813831-31813880)
[»] chr4 (10 HSPs)
chr4 (1-160)||(55441684-55441844)
chr4 (2-160)||(11086918-11087077)
chr4 (32-82)||(39163386-39163436)
chr4 (32-82)||(46611385-46611435)
chr4 (32-72)||(53020219-53020259)
chr4 (32-82)||(54349043-54349093)
chr4 (112-159)||(54348932-54348979)
chr4 (32-82)||(4947084-4947134)
chr4 (110-160)||(35802447-35802497)
chr4 (32-64)||(24777673-24777705)
[»] chr3 (7 HSPs)
chr3 (1-159)||(39944223-39944382)
chr3 (1-146)||(49238245-49238385)
chr3 (1-138)||(25482837-25482976)
chr3 (32-72)||(49020757-49020797)
chr3 (110-160)||(43543095-43543145)
chr3 (110-159)||(49020648-49020697)
chr3 (20-73)||(51837740-51837793)
[»] chr2 (7 HSPs)
chr2 (15-157)||(36562136-36562279)
chr2 (32-82)||(10375387-10375437)
chr2 (32-82)||(19258760-19258810)
chr2 (21-139)||(37509696-37509816)
chr2 (32-82)||(24573771-24573821)
chr2 (32-82)||(27613719-27613769)
chr2 (32-82)||(10377649-10377699)
[»] chr8 (4 HSPs)
chr8 (20-160)||(33328683-33328825)
chr8 (1-121)||(33546197-33546319)
chr8 (32-146)||(24801961-24802077)
chr8 (32-71)||(12231691-12231730)
[»] chr7 (3 HSPs)
chr7 (32-82)||(4588856-4588906)
chr7 (32-82)||(219014-219064)
chr7 (112-161)||(4588970-4589019)
[»] chr6 (1 HSPs)
chr6 (1-76)||(241479-241554)
[»] scaffold0316 (1 HSPs)
scaffold0316 (32-70)||(10573-10611)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36730002 - 36730222
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga-ctctttaaaaagacatt 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  36730002 gcaattctaacataaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagatttgaacgaactctttaaaaagacatt 36730101  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaacactaccaaaataaaaattgcagaaatatgagtggctgctgt 199  Q
    |||   |||||| ||||| |||||||||||| ||||||||| ||||| ||| | ||||||| |||||||||||||||| |||||||||||||||||||||    
T  36730102 atccagtcctaagccattaatgaataatgaagtttacattaccaaaaatcgatgtaaacacaaccaaaataaaaattgtagaaatatgagtggctgctgt 36730201  T
Q  200 aagtagcgaagttgctaattt 220  Q
    |||||||||||||||||||||    
T  36730202 aagtagcgaagttgctaattt 36730222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 20062636 - 20062478
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaac-gact-ctttaaaaagacat 98  Q
    ||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||  |||||||||||||    
T  20062636 gcaattctaacatcaaaaagaacaataattttgttcttaaagaatgcatgaagtgatatcataaaccgcgagacttgaactaactgttttaaaaagacat 20062537  T
Q  99 tatctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaa 157  Q
    ||||   |||||||||||||||| |||||||| ||||| ||| ||||| ||||| ||||    
T  20062536 tatccagtcctaaaccattgatggataatgaagtttacgttaccaaaaatcggtgtaaa 20062478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20059611 - 20059475
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga--ctctttaaaaagacat 98  Q
    |||||| |||| | |||| |||||| || ||| ||||||||||||||| |||||||| ||||||| ||| |||||| |||||  | ||||||||||||||    
T  20059611 gcaattttaacatcaaaaagaacaacaattttattcttaaagaatgcaggaagtgatgtcataaatcgcaagacttgaacgaaccactttaaaaagacat 20059512  T
Q  99 tatctgatcctaaaccattgatgaataatgaatttta 135  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  20059511 tatctgatcctaaaccattgatggataatgaagttta 20059475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 26049884 - 26050032
Alignment:
Q  13 taaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga--ctctttaaaaagacattatctgatccta 110  Q
    |||||| |||| |||  |||||||||||||||||||||||||| ||| ||||||||| |||||| |||||  | |||||||||||||||||| | |||||    
T  26049884 taaaaaagaacgatagttttgttcttaaagaatgcatgaagtgctattataaaccgctagacttgaacgaaccactttaaaaagacattatccggtccta 26049983  T
Q  111 aaccattgatgaataatgaattttacattatcaaaattcggtataaaca 159  Q
    || |||||||| |||||||| ||||| ||| ||||| || |||||||||    
T  26049984 aaacattgatggataatgaaatttacgttaccaaaaatcagtataaaca 26050032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 30786167 - 30786117
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  30786167 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 30786117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 46888763 - 46888713
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46888763 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 46886741 - 46886692
Alignment:
Q  33 gttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46886741 gttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 20507500 - 20507660
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacatt 99  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  20507500 gcaattctaacataaaaatgaacaataattttgttcttaaagaatgcatgaagtgatatcataaaccgcgagacttgaacgaactctttaaaaagacatt 20507599  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    ||| | || ||| ||||||||| |||||||| ||||||||| ||||| ||||| |||||||    
T  20507600 atccggtcataagccattgatggataatgaagtttacattaccaaaaatcggtgtaaacac 20507660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 21947520 - 21947680
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacatt 99  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  21947520 gcaattctaacataaaaatgaacaataattttgttcttaaagaatgcatttagtgatatcataaaccgcgagacttgaacgaactctttaaaaagacatt 21947619  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    ||| | | |||| ||||||||| |||||||| ||||||||| ||||| || || |||||||    
T  21947620 atccggttctaagccattgatggataatgaagtttacattaccaaaaatcagtgtaaacac 21947680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 17186317 - 17186170
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga--ctctttaaaaagacat 98  Q
    ||||||||||| |||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||  | ||||||||||||||    
T  17186317 gcaattctaacataaaaaagaacgataattttgttcgtaaagaatgcatgaagtgatatcataaaccgtgaggcttgaacgaaccactttaaaaagacat 17186218  T
Q  99 tatctgatcctaaaccattgatgaataatgaattttacattatcaaaa 146  Q
    |||||| |||||||||||||||| |||||||| ||||| ||| |||||    
T  17186217 tatctggtcctaaaccattgatggataatgaagtttacgttaccaaaa 17186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 10734747 - 10734645
Alignment:
Q  20 gaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagaca-ttatctgatcctaaaccatt 117  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||| |||| || || |||||||| | ||||| | ||||||||||||    
T  10734747 gaacaataattttgttcttaaagaacgcatgaagtgatatcataaatcgtgagacttgaacgaacactataaaaagagatttatccggtcctaaaccatt 10734648  T
Q  118 gat 120  Q
    |||    
T  10734647 gat 10734645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 31813732 - 31813771
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcga 71  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  31813732 tgttcttaaagaattcatgaagtgatgtcataaaccgcga 31813771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 41636923 - 41636881
Alignment:
Q  34 ttcttaaagaatgcatgaagtgatatcataaaccgcgagactt 76  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  41636923 ttcttaaagaatgcatgaagtggtgtcataaaccgcgaaactt 41636881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 31813831 - 31813880
Alignment:
Q  110 aaaccattgatgaataatgaattttacattatcaaaattcggtataaaca 159  Q
    |||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  31813831 aaaccattgatggataatgaagtttacattaccaaaaatcggtgtaaaca 31813880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 55441684 - 55441844
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacatt 99  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  55441684 gcaattctaacataaaaatgaacaataattttgttcttaaagaatgcatgaagtgatatcataaaccgcgagacttgaacgaactctttaaaaagacatt 55441783  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    ||| | || ||| ||||||||| |||||||| ||||||||| ||||| ||||| |||||||    
T  55441784 atccggtcataagccattgatggataatgaagtttacattaccaaaaatcggtgtaaacac 55441844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 11087077 - 11086918
Alignment:
Q  2 caattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacgactctttaaaaagaca-tta 100  Q
    |||||||||| | || | |||||||||||||||||||||| || |||| ||||||||||||||| ||| |||||| |  |||  | |||||||||| |||    
T  11087077 caattctaacattaataagaacaataactttgttcttaaaaaacgcataaagtgatatcataaatcgcaagacttgacggacattataaaaagacattta 11086978  T
Q  101 tctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    |||  ||||||| | |||||   ||||||| ||||||||||||||| | ||| |||||||    
T  11086977 tctagtcctaaagcgttgatagctaatgaagtttacattatcaaaaattggtgtaaacac 11086918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 39163386 - 39163436
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  39163386 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 39163436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 46611435 - 46611385
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46611435 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46611385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 53020219 - 53020259
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgag 72  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  53020219 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgag 53020259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 54349093 - 54349043
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||| |||||    
T  54349093 tgttcttaaagaatgcaggaagtgatgtcataaaccgcgaggcttgaacga 54349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 54348979 - 54348932
Alignment:
Q  112 accattgatgaataatgaattttacattatcaaaattcggtataaaca 159  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||    
T  54348979 accattgatgaataatgaagtttacattaccaaaaatcggtgtaaaca 54348932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 4947134 - 4947084
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    ||||||||||||| |||||||||||| |||||  ||||||||||| |||||    
T  4947134 tgttcttaaagaaagcatgaagtgatgtcataggccgcgagacttgaacga 4947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 35802447 - 35802497
Alignment:
Q  110 aaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    |||||||||||| |||||||| ||||||||| ||||| ||||| |||||||    
T  35802447 aaaccattgatggataatgaagtttacattaccaaaaatcggtgtaaacac 35802497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 24777705 - 24777673
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataa 64  Q
    |||||||||||||||||||||||||| ||||||    
T  24777705 tgttcttaaagaatgcatgaagtgatgtcataa 24777673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 39944382 - 39944223
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacatt 99  Q
    ||||||||||| | |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||    
T  39944382 gcaattctaacatcaaaaggaacaataattttgttcttaaataatgcatgaagtgatatcataaaccgcgagacttgaacgaactctttaagaaaacatt 39944283  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaattcggtataaaca 159  Q
    ||| |||||||| ||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  39944282 atccgatcctaagccattgatggataatgaagtttacattaccaaaattcggtgtaaaca 39944223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 49238245 - 49238385
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacatt 99  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||      | |||| |||| | ||||||||||||||||    
T  49238245 gcaattctaacgtaaaaatgaacaataattttattcttaaagaatgcatgaagtgatatcataa------aaacttgaacgaagtctttaaaaagacatt 49238338  T
Q  100 atctgatcctaaaccattgatgaataatgaattttacattatcaaaa 146  Q
    |||  ||| ||||  ||||||||||||| || ||||||||| |||||    
T  49238339 atccaatcataaattattgatgaataataaaatttacattagcaaaa 49238385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 25482976 - 25482837
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaac-gactctttaaaaagaca-t 98  Q
    ||||||||||| | || | ||||||||| |||||||||||||||  ||||||||||||||||||||||| ||| || |||  ||  |||||||||||| |    
T  25482976 gcaattctaacattaataagaacaataattttgttcttaaagaacacatgaagtgatatcataaaccgcaagatttaaacaaacgttttaaaaagacatt 25482877  T
Q  99 tatctgatcctaaaccattgatgaataatgaattttacat 138  Q
    |||  |||||||||||||||||| |||||||| |||||||    
T  25482876 tattcgatcctaaaccattgatggataatgaagtttacat 25482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 49020797 - 49020757
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgag 72  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  49020797 tgtttttaaagaatgcatgaagtgatgtcataaaccgcgag 49020757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 43543145 - 43543095
Alignment:
Q  110 aaaccattgatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    |||||||||||| |||||||| ||||||||| ||||| ||||| |||||||    
T  43543145 aaaccattgatggataatgaagtttacattaccaaaaatcggtgtaaacac 43543095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 49020697 - 49020648
Alignment:
Q  110 aaaccattgatgaataatgaattttacattatcaaaattcggtataaaca 159  Q
    |||||||||||| |||||||| ||||||||| ||||| ||||| ||||||    
T  49020697 aaaccattgatggataatgaagtttacattaccaaaaatcggtgtaaaca 49020648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 51837793 - 51837740
Alignment:
Q  20 gaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgaga 73  Q
    ||||||||| ||| |||||||| || | |||||||||||||||||| |||||||    
T  51837793 gaacaataattttattcttaaaaaacgtatgaagtgatatcataaatcgcgaga 51837740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 36562136 - 36562279
Alignment:
Q  15 aaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg-actctttaaaaagacattatctgatcctaaac 113  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||| |||||| ||| |||||     
T  36562136 aaaaagaacaataattttgttcttaaagaatgcatgaagtgatatcataaaccgcgaggcttgaacgaaccctttaaaaagatattatccgatgctaaat 36562235  T
Q  114 cattgatgaataatgaattttacattatcaaaattcggtataaa 157  Q
    |||||||| |||||||| ||||| ||| ||||| ||||| ||||    
T  36562236 cattgatggataatgaaatttactttaccaaaaatcggtgtaaa 36562279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 10375387 - 10375437
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  10375387 tgttcttaaagaatgtatgaagtgatgtcataaaccgcgagacttgaacga 10375437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 19258810 - 19258760
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  19258810 tgttcttaaagaatgaatgaagtgatgtcataaaccgcgagacttgaacga 19258760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 37509816 - 37509696
Alignment:
Q  21 aacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaac-gactctttaaaaagaca-ttatctgatcctaaaccattg 118  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||  | ||||||| ||| ||| || |||||||||| |||||  ||||||||    ||    
T  37509816 aacaataattttgttcttaaagaacgcataaagtgatatcataaattgtgagacttaaacggacactataaaaagacatttatccaatcctaaagtgctg 37509717  T
Q  119 atgaataatgaattttacatt 139  Q
    ||||||||| || ||||||||    
T  37509716 atgaataataaagtttacatt 37509696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 24573821 - 24573771
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||| |||||    
T  24573821 tgttcttaaagaatgcatgaagtgatgtcataaaccacgaggcttgaacga 24573771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 27613769 - 27613719
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  27613769 tgttcttaaagaatgcatgaagtgatgtcataaactgcgaggcttgaacga 27613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 10377649 - 10377699
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||| |||| |||||||||| |||||||||||||| ||| |||||    
T  10377649 tgttcttaaaaaatgtatgaagtgatgtcataaaccgcgaggcttgaacga 10377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 33328683 - 33328825
Alignment:
Q  20 gaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacgactc--tttaaaaagacattatctgatcctaaaccatt 117  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||  ||||| ||| |||||  |  ||||||||||||||||| | ||||||||||||    
T  33328683 gaacaataattttgttctcaaagaatgcatgaagtgatatcataaattgcgaggcttgaacgaaccattttaaaaagacattatccggtcctaaaccatt 33328782  T
Q  118 gatgaataatgaattttacattatcaaaattcggtataaacac 160  Q
    |||| |||||||| ||||||||| ||||| ||| | |||||||    
T  33328783 gatggataatgaagtttacattaccaaaaatcgatgtaaacac 33328825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33546197 - 33546319
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaac-gactctttaaaaagaca-t 98  Q
    ||||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||  || ||||| ||||||| |    
T  33546197 gcaattctaacatcaaaatgaacaataatttagttcttaaagaatgcatgaagtgatatcataaactgtgagacttaaacaaacactttataaagacatt 33546296  T
Q  99 tatctgatcctaaaccattgatg 121  Q
    |||| | |||||||| |||||||    
T  33546297 tatccggtcctaaactattgatg 33546319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 24801961 - 24802077
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga--ctctttaaaaagacattatctgatcctaaaccattgatgaataatga 129  Q
    |||||||||||||| ||||||||||| |||||| ||| ||||||| ||| |  | |||||||||||||||||| | |||||||||||||||| |||||||    
T  24801961 tgttcttaaagaatccatgaagtgatgtcataagccgtgagacttgaacaaaccactttaaaaagacattatccggtcctaaaccattgatggataatga 24802060  T
Q  130 attttacattatcaaaa 146  Q
    | ||||| ||| |||||    
T  24802061 agtttacgttaccaaaa 24802077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 12231691 - 12231730
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcga 71  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  12231691 tgttcttaaagaatgcatgaagtgatgtcttaaaccgcga 12231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 4588856 - 4588906
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  4588856 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgaggcttgaacga 4588906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 219014 - 219064
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 82  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||| |||||    
T  219014 tgtttttaaagaatgcatgaagtgatgtcataaatcgcgaggcttgaacga 219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 4588970 - 4589019
Alignment:
Q  112 accattgatgaataatgaattttacattatcaaaattcggtataaacact 161  Q
    |||||||||| ||||| || ||||||||||||||| ||||| ||||||||    
T  4588970 accattgatggataataaagtttacattatcaaaaatcggtgtaaacact 4589019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 241479 - 241554
Alignment:
Q  1 gcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactt 76  Q
    ||||||||||| | || | ||||||||| ||||||||||||||||| || || |||| ||||||| ||||||||||    
T  241479 gcaattctaacattaataagaacaataattttgttcttaaagaatgaataaaatgatctcataaatcgcgagactt 241554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 10611 - 10573
Alignment:
Q  32 tgttcttaaagaatgcatgaagtgatatcataaaccgcg 70  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10611 tgttcttaaagaatgcatgaagtgatgtcataaaccgcg 10573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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