View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_24 (Length: 237)
Name: NF1912_low_24
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 30418700 - 30418883
Alignment:
| Q |
40 |
cctaatcctatttcctaacaacattaaaaataagaataaaaaagaatacttacagcgcaaccaacgtttttgctccaagatccacccaaataagcaagat |
139 |
Q |
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| T |
30418700 |
cctaatcctatttcctaacaacattaaaaataagaataaaaaagaatacttacagcgcaaccaacgtttttgctccaagatccacccaaataagcaagat |
30418799 |
T |
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| Q |
140 |
caccactacaaacaagctgagtatcatgaaaagcagaacaattcaagacacggacaacgtcttttcctccaaccatatgcttcc |
223 |
Q |
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| T |
30418800 |
caccactacaaacaagctgagtatcatgaaaagcagaacaattcaagacacggacaacgtcttttcctccaaccatatgcttcc |
30418883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30418638 - 30418677
Alignment:
| Q |
1 |
caatcaacaatagattacattaggtaatcaaaatgatctc |
40 |
Q |
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| T |
30418638 |
caatcaccaatagattacattaggtaatcaaaatgatctc |
30418677 |
T |
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