View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_25 (Length: 237)

Name: NF1912_low_25
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_25
NF1912_low_25
[»] chr5 (7 HSPs)
chr5 (147-226)||(11335151-11335230)
chr5 (1-69)||(11335599-11335668)
chr5 (147-213)||(11335202-11335269)
chr5 (147-216)||(11335120-11335192)
chr5 (181-214)||(11335312-11335345)
chr5 (147-199)||(11335289-11335341)
chr5 (155-202)||(9511903-9511953)
[»] chr2 (6 HSPs)
chr2 (165-214)||(29409358-29409407)
chr2 (165-213)||(38583917-38583965)
chr2 (165-214)||(8986315-8986364)
chr2 (154-204)||(8986342-8986394)
chr2 (165-214)||(8986463-8986512)
chr2 (177-214)||(38584023-38584060)
[»] chr6 (4 HSPs)
chr6 (153-204)||(22860895-22860946)
chr6 (153-202)||(18981357-18981407)
chr6 (179-213)||(22860737-22860771)
chr6 (165-214)||(22860868-22860918)
[»] chr7 (4 HSPs)
chr7 (177-214)||(26403160-26403197)
chr7 (154-204)||(46963711-46963763)
chr7 (165-214)||(46963741-46963790)
chr7 (170-214)||(46963590-46963634)
[»] chr4 (5 HSPs)
chr4 (152-200)||(16871166-16871216)
chr4 (179-213)||(16871155-16871189)
chr4 (165-214)||(16870846-16870895)
chr4 (154-204)||(16870873-16870925)
chr4 (165-214)||(16870994-16871043)
[»] chr3 (4 HSPs)
chr3 (165-210)||(42530833-42530879)
chr3 (180-214)||(50295873-50295907)
chr3 (170-202)||(42530805-42530837)
chr3 (153-196)||(50295884-50295928)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 11335230 - 11335151
Alignment:
Q  147 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctcccctgatgat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11335230 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattgcattgcacttctcctccccttatgat 11335151  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11335668 - 11335599
Alignment:
Q  1 tctgtctgactctagttgcttttgttcaacttgttttggtttgtttag-tcggttcgttttggtgcttca 69  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||    
T  11335668 tctgtctgactctagttgctttggttcaacttgttttggtttgtttagtttggttcgttttggtgtttca 11335599  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 11335269 - 11335202
Alignment:
Q  147 ttctcctgattgattgctttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctc 213  Q
    ||||||| |||||||||||||||||||||  ||| |||||||| |||||||||||| |||||||||||    
T  11335269 ttctccttattgattgctttgcacttctcctcttattgattctcctgattgattgctttgcacttctc 11335202  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 11335192 - 11335120
Alignment:
Q  147 ttctcctgattgattgctttgcacttctca---ccttttgattcttctgattgattgcattgcacttctcctc 216  Q
    |||| |||||||||||| |||||||||||    |||| ||||||||||||||||||||  |||||||||||||    
T  11335192 ttcttctgattgattgcattgcacttctcctccccttatgattcttctgattgattgccctgcacttctcctc 11335120  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 11335345 - 11335312
Alignment:
Q  181 ttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||||||||||||||||||||||||||    
T  11335345 ttgattcttctgattgattgcattgcacttctcc 11335312  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 11335341 - 11335289
Alignment:
Q  147 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgatt 199  Q
    |||| |||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  11335341 ttcttctgattgattgcattgcacttctccccttttcattcttttgattgatt 11335289  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 9511903 - 9511953
Alignment:
Q  155 attgattgctttgcacttctca---ccttttgattcttctgattgattgca 202  Q
    ||||||||| |||||||||| |   ||||||||||||||||||||||||||    
T  9511903 attgattgcattgcacttctgatccccttttgattcttctgattgattgca 9511953  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 29409407 - 29409358
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  29409407 ttgcacgtctcccctgttgattcttctgattgattgcattgcacttctcc 29409358  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 38583965 - 38583917
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctc 213  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  38583965 ttgcacttctccccctttgattcttctgattgattgtattgcacttctc 38583917  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 8986315 - 8986364
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  8986315 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 8986364  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 8986342 - 8986394
Alignment:
Q  154 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 204  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  8986342 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 8986394  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 8986463 - 8986512
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||  ||| ||| |||||| |||||||||||||||||||||||    
T  8986463 ttgcacttctaccctattggttcttccgattgattgcattgcacttctcc 8986512  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 38584060 - 38584023
Alignment:
Q  177 ccttttgattcttctgattgattgcattgcacttctcc 214  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  38584060 ccttttgatttttctgagtgattgcattgcacttctcc 38584023  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 22860895 - 22860946
Alignment:
Q  153 tgattgattgctttgcacttctcaccttttgattcttctgattgattgcatt 204  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||||||    
T  22860895 tgattgattgcattgcacttctccccttttggttcttccgattgattgcatt 22860946  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 18981357 - 18981407
Alignment:
Q  153 tgattgattgctttgcacttct-caccttttgattcttctgattgattgca 202  Q
    ||||||||||| |||||||| | | ||||||||||||||||||||||||||    
T  18981357 tgattgattgcattgcactttttctccttttgattcttctgattgattgca 18981407  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 22860737 - 22860771
Alignment:
Q  179 ttttgattcttctgattgattgcattgcacttctc 213  Q
    |||||||||||||| ||||||||||||||||||||    
T  22860737 ttttgattcttctgtttgattgcattgcacttctc 22860771  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 22860868 - 22860918
Alignment:
Q  165 ttgcacttctcacctt-ttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||| || | ||||||||| ||||||||||||||||||||||||    
T  22860868 ttgcacttctccccctattgattcttttgattgattgcattgcacttctcc 22860918  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 26403160 - 26403197
Alignment:
Q  177 ccttttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26403160 ccttttgattcttttgattgattgcattgcacttctcc 26403197  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 46963763 - 46963711
Alignment:
Q  154 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 204  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  46963763 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 46963711  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 46963790 - 46963741
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  46963790 ttgcacttctcccctattggttcttccgattgattgcattgtacttctcc 46963741  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 46963634 - 46963590
Alignment:
Q  170 cttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    |||||| ||| ||| |||||| |||||||||||||||||||||||    
T  46963634 cttctcccctattggttcttccgattgattgcattgcacttctcc 46963590  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 16871166 - 16871216
Alignment:
Q  152 ctgattgattgctttgcacttctcacc--ttttgattcttctgattgattg 200  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||||||    
T  16871166 ctgattgattgcattgcacttctctccccttttgattcttctgattgattg 16871216  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 16871155 - 16871189
Alignment:
Q  179 ttttgattcttctgattgattgcattgcacttctc 213  Q
    ||||||||| |||||||||||||||||||||||||    
T  16871155 ttttgattcgtctgattgattgcattgcacttctc 16871189  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 16870846 - 16870895
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| ||||||||    
T  16870846 ttgcacttctcccctgttggttcttccgattgattgcattgtacttctcc 16870895  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 16870873 - 16870925
Alignment:
Q  154 gattgattgctttgcacttctcac--cttttgattcttctgattgattgcatt 204  Q
    |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||    
T  16870873 gattgattgcattgtacttctcccatcttttgattcttctgattgattgcatt 16870925  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 16870994 - 16871043
Alignment:
Q  165 ttgcacttctcaccttttgattcttctgattgattgcattgcacttctcc 214  Q
    |||||||| || ||| ||| |||||| |||||||||||||||||||||||    
T  16870994 ttgcacttttcccctattggttcttccgattgattgcattgcacttctcc 16871043  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 42530833 - 42530879
Alignment:
Q  165 ttgcacttct-caccttttgattcttctgattgattgcattgcactt 210  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||    
T  42530833 ttgcacttcttccccttttgattcttctgattgattgcatttcactt 42530879  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 50295873 - 50295907
Alignment:
Q  180 tttgattcttctgattgattgcattgcacttctcc 214  Q
    |||||||||| ||||||||||||||||||||||||    
T  50295873 tttgattcttttgattgattgcattgcacttctcc 50295907  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 42530805 - 42530837
Alignment:
Q  170 cttctcaccttttgattcttctgattgattgca 202  Q
    |||||| ||||||||||||||||||||||||||    
T  42530805 cttctccccttttgattcttctgattgattgca 42530837  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 50295884 - 50295928
Alignment:
Q  153 tgattgattgctttgcacttctcac-cttttgattcttctgattg 196  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||    
T  50295884 tgattgattgcattgcacttctccctcttttgattcttctgattg 50295928  T

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