View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_26 (Length: 231)

Name: NF1912_low_26
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_26
NF1912_low_26
[»] chr3 (3 HSPs)
chr3 (15-225)||(9460063-9460273)
chr3 (15-225)||(9471304-9471514)
chr3 (15-225)||(16486049-16486260)
[»] chr1 (2 HSPs)
chr1 (15-225)||(5723471-5723681)
chr1 (15-225)||(44600498-44600708)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 9460063 - 9460273
Alignment:
Q  15 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgacgggtatcagaaggagaagaaaca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  9460063 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 9460162  T
Q  115 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9460163 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 9460262  T
Q  215 ttttgatgatg 225  Q
    |||||||||||    
T  9460263 ttttgatgatg 9460273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 9471304 - 9471514
Alignment:
Q  15 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgacgggtatcagaaggagaagaaaca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  9471304 aggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 9471403  T
Q  115 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 214  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471404 gggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 9471503  T
Q  215 ttttgatgatg 225  Q
    |||||||||||    
T  9471504 ttttgatgatg 9471514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 16486049 - 16486260
Alignment:
Q  15 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgacgggtatcagaaggagaagaaaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  16486049 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 16486148  T
Q  115 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaag-ttc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  16486149 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagtttc 16486248  T
Q  214 tttttgatgatg 225  Q
    ||||||||||||    
T  16486249 tttttgatgatg 16486260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 5723471 - 5723681
Alignment:
Q  15 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgacgggtatcagaaggagaagaaaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  5723471 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 5723570  T
Q  115 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5723571 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagttct 5723670  T
Q  215 ttttgatgatg 225  Q
    |||| ||||||    
T  5723671 tttttatgatg 5723681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 44600498 - 44600708
Alignment:
Q  15 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgacgggtatcagaaggagaagaaaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  44600498 aggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaaaca 44600597  T
Q  115 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagttct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44600598 gggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagttct 44600697  T
Q  215 ttttgatgatg 225  Q
    |||||||||||    
T  44600698 ttttgatgatg 44600708  T

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