View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1912_low_3 (Length: 688)

Name: NF1912_low_3
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1912_low_3
NF1912_low_3
[»] chr1 (1 HSPs)
chr1 (1-586)||(8354642-8355267)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 8354642 - 8355267
Alignment:
Q  1 aaagagactcaagaaatgttggatgtttgtgggaagcataatatcacatgtgacattgaattaatcaaagctgatacaatcaatgaagcttttcagcgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354642 aaagagactcaagaaatgttggatgtttgtgggaagcataatatcacatgtgacattgaattaatcaaagctgatacaatcaatgaagcttttcagcgtc 8354741  T
Q  101 ttgtgaagaatgatgttcgttaccgttttgtcattgacattgctaatgcttcccctgcaacctaa-----aaccttttgctttgggaatgatagatatat 195  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||| ||||||    
T  8354742 ttttgaagaatgatgttcgttaccgttttgtcattgacattgctaatgcttcccctgcaacctaacctaaaaccctttgctttgggaatgatatatatat 8354841  T
Q  196 ------------catggataactgttttgtttttgttgttgtaagagactcagttcaaaaatacaccctagtctatctattttaataagattacttatct 283  Q
                ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354842 atatatatatatcatggataactgttttgtttttgttgttgtaaga--ctcagttcaaaaatacaccctagtctatctattttaataagattacttatct 8354939  T
Q  284 atcctatcct-----tgaat--tactcggattgctcctttaataatggagtacttggtcattcattttaaaaactatcggttttggtccctttcttatag 376  Q
    ||||||||||     |||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354940 atcctatcctatccttgaatattactcggattggtcctttaataatggagtacttggtcattcattttaaaaactatcggttttggtccctttcttatag 8355039  T
Q  377 ta------------------ctcaaaaaggatgattttatatgttttataagtcatacaaatataaatttcaggggtttgcattccaagttggtttacaa 458  Q
    ||                  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8355040 tatttttatttttttttaaactcaaaaaggatgattttatatgttttataagtcatataaatataaatttcaggggtttgcattccaagttggtttacaa 8355139  T
Q  459 attgaaagtaaattaaaacttaaatttagaatcaagacgaacaattaagattgtctgaatccctctatgttcctgttgggtaatttgatatcctaaatat 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8355140 attgaaagtaaattaaaacttaaatttagaatcaagacgaacaattaagattgtctgaatccctctatgttcctgttgggtaatttgatatcctaaataa 8355239  T
Q  559 tatcaactttgttcctctgttcatgata 586  Q
    ||||||||||||||||||||||||||||    
T  8355240 tatcaactttgttcctctgttcatgata 8355267  T

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