View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_6 (Length: 427)
Name: NF1912_low_6
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 46147307 - 46147705
Alignment:
| Q |
16 |
atgcataccgtttatggctttgctcttcattagagagaaaacaacataaacatttcaagggcatatttcttttgtgatagaatctctaattaacttggag |
115 |
Q |
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| T |
46147307 |
atgcataccgtttatggctttgctcttcattagagagaaaacaacataaacatttcaagggcatatttcttttgtgatagaatctctaactaacttggag |
46147406 |
T |
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| Q |
116 |
gatggtatttagaatctaaatttcctattgaaaaatagatgaataataatattaagaagtttttggaggtgagtgtaagagttggaatgggaaaattaga |
215 |
Q |
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| T |
46147407 |
gatggtatttagaatctaaatttcctattgaaaaatagatgaataata---ttaagaagtttttggaggtgagtgta-gagttggaatgggaaaattaga |
46147502 |
T |
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| Q |
216 |
tttacaagaaagaagcaaaaatatatcggcaaatgcaaagaaacaacaagaaataagaaaatgacttacgaagaggacaaagggctgccttgaaagtcaa |
315 |
Q |
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| T |
46147503 |
tttacaagaaagaagcaaaaatatatcggcaaatgcaaagaaacaacaagaaataagaaaatgacttacgaagaggacaaagggctgccttgaaagtcaa |
46147602 |
T |
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| Q |
316 |
ggactctaataggttaatagtagagacgcaagcaaattcaatgagtattatatgtcttaattgccttaatagtagagacacaggccaattcattgagtat |
415 |
Q |
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| T |
46147603 |
ggactctaataggttaatagtagagacgcaagcaaattcaatgagtattttatgtcttaattgccttaatagtagagacacaggccaattcattgagtat |
46147702 |
T |
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