View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1912_low_9 (Length: 381)
Name: NF1912_low_9
Description: NF1912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1912_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 42530048 - 42530418
Alignment:
| Q |
18 |
atgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaagaaaaccaa |
117 |
Q |
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| T |
42530048 |
atgcacacttcaacttaaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaaggaaaccaa |
42530147 |
T |
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| Q |
118 |
tgcggtaggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaata |
217 |
Q |
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| T |
42530148 |
tgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaata |
42530247 |
T |
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| Q |
218 |
atgtcagtt------ccagaggctttggagggtatagcaatcctcta--------ttatgatgaagaccggaacacgatttatacgggtgacagacatgg |
303 |
Q |
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| T |
42530248 |
atgtcagttccagtcccagaggctttggagggtataaccaccctctattatgaatttatgatgaagaccggaacgcgatttatacgggtaacagacatgg |
42530347 |
T |
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| Q |
304 |
tcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggagtaggttttattgtttcttctca |
374 |
Q |
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| T |
42530348 |
tcttgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggttttattgtttcttctca |
42530418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 42535780 - 42536120
Alignment:
| Q |
34 |
aaaccacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgaagaaaaccaatgcggtaggttccatc |
133 |
Q |
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| T |
42535780 |
aaacaacaattacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatc |
42535879 |
T |
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| Q |
134 |
aatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagagg |
233 |
Q |
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| T |
42535880 |
aatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagagg |
42535979 |
T |
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| Q |
234 |
ctttggagggtatagcaatcctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaactccaacca |
333 |
Q |
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| T |
42535980 |
ctttggagggtataaccaccctctattatgatgaagaccggaacgcgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaacca |
42536079 |
T |
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| Q |
334 |
actgatgataaaaaaggagtaggttttattgtttcttctca |
374 |
Q |
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| T |
42536080 |
actaatgataaaaaaggaataggttttattgtttcttctca |
42536120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
125 |
ggttccatcaatgtgcgcagcatcttgtcggggaaatgtgtggcgaaaattaatgctgcaaa |
186 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 27826179 - 27826252
Alignment:
| Q |
253 |
cctctattatgatgaagaccggaacacgatttatacgggtgacagacatggtcttgttcatgtctggtccaact |
326 |
Q |
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| T |
27826179 |
cctcttttatgatgaagaccggaacgagatctatactggtaatagacatggttttgttcatgtatggtccaact |
27826252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 27825797 - 27825857
Alignment:
| Q |
44 |
tacataacaagtgatcagaacctgatcatttcttactgcagggatgactctgaagatcaat |
104 |
Q |
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| T |
27825797 |
tacataacaagtgatcaggacctgattatatcgtactgcaaagctgaatctgaagatcaat |
27825857 |
T |
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