View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19130_high_10 (Length: 214)

Name: NF19130_high_10
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19130_high_10
NF19130_high_10
[»] chr2 (4 HSPs)
chr2 (13-196)||(33026372-33026555)
chr2 (12-188)||(33037868-33038044)
chr2 (20-196)||(33020038-33020214)
chr2 (28-129)||(33023912-33024013)
[»] chr6 (1 HSPs)
chr6 (25-182)||(24417650-24417804)
[»] scaffold1004 (1 HSPs)
scaffold1004 (19-180)||(1867-2028)
[»] scaffold0760 (1 HSPs)
scaffold0760 (19-180)||(4362-4523)
[»] chr3 (9 HSPs)
chr3 (19-76)||(9608626-9608683)
chr3 (38-78)||(771770-771810)
chr3 (162-196)||(763714-763748)
chr3 (162-196)||(9585288-9585322)
chr3 (159-196)||(783952-783989)
chr3 (25-78)||(784070-784123)
chr3 (159-188)||(7430652-7430681)
chr3 (99-132)||(7443203-7443236)
chr3 (25-78)||(9587459-9587512)
[»] chr7 (1 HSPs)
chr7 (163-195)||(27755555-27755587)
[»] scaffold0044 (1 HSPs)
scaffold0044 (34-129)||(88876-88971)
[»] chr1 (2 HSPs)
chr1 (160-193)||(51858465-51858498)
chr1 (160-196)||(51854806-51854842)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 33026372 - 33026555
Alignment:
Q  13 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33026372 agagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttga 33026471  T
Q  113 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026472 gtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatc 33026555  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 33037868 - 33038044
Alignment:
Q  12 cagagaggaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtg 111  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  | | | ||||||||||||     
T  33037868 cagagaggaagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtc 33037967  T
Q  112 agtggcactgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaagga 188  Q
     ||||||||||||||||| ||||||| ||| | ||||||||||  || |||||||||||||||||||||||||||||    
T  33037968 ggtggcactgttaattggttgtcgttagacgaagtgagttctttgtgcgtcattgtttctcttgatttggagaagga 33038044  T

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Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 33020038 - 33020214
Alignment:
Q  20 aagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcac 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||| |  | | | |||||||||||||||||||||    
T  33020038 aagtaagtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcac 33020137  T
Q  120 tgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatc 196  Q
     ||||||||| || | |||||  ||||||||||| | |||||||||||||||||||||||||||||||||| |||||    
T  33020138 agttaattggttggcattcgaagatgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatc 33020214  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 33023912 - 33024013
Alignment:
Q  28 gttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaatt 127  Q
    ||||||||||||| |||  |||| ||| ||||||| ||| |||||||||||  |||| |||||  | | || ||||||||||||||| ||| ||||||||    
T  33023912 gttcatactttggatacgaatacatggtgaaggatgccaaacttcccatattttggctcgttttgtgggttgggaatatttgtgagtcgcaatgttaatt 33024011  T
Q  128 gg 129  Q
    ||    
T  33024012 gg 33024013  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 24417804 - 24417650
Alignment:
Q  25 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 124  Q
    |||||||||||  ||||||||||| ||||||||| ||||| |||||||||||||  | ||| |||  |||| || ||||||||||||||||||||| |||    
T  24417804 agtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactatta 24417705  T
Q  125 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttgga 182  Q
    ||||| ||  | | ||| |||   ||||||| | | ||||||||||||||||||||||    
T  24417704 attggttggtggtagacgatg---gttcttcgtttttcattgtttctcttgatttgga 24417650  T

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Target: scaffold1004 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 1867 - 2028
Alignment:
Q  19 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 118  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  1867 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 1966  T
Q  119 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttg 180  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||    
T  1967 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttg 2028  T

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Target: scaffold0760 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 4362 - 4523
Alignment:
Q  19 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggca 118  Q
    ||||| ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| |||||    
T  4362 gaagttagtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggca 4461  T
Q  119 ctgttaattggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttg 180  Q
     |||||||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||    
T  4462 atgttaattggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttg 4523  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 9608683 - 9608626
Alignment:
Q  19 gaagtaagtgttcatactttgggtacagatacttggagaaggataccagacttcccat 76  Q
    ||||| ||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  9608683 gaagttagtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 771810 - 771770
Alignment:
Q  38 tgggtacagatacttggagaaggataccagacttcccatat 78  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatat 771770  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 763748 - 763714
Alignment:
Q  162 cattgtttctcttgatttggagaaggagttgtatc 196  Q
    ||||||||||||||||||||||||||||| |||||    
T  763748 cattgtttctcttgatttggagaaggagtcgtatc 763714  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 9585322 - 9585288
Alignment:
Q  162 cattgtttctcttgatttggagaaggagttgtatc 196  Q
    ||||||||||||||||||||||||||||| |||||    
T  9585322 cattgtttctcttgatttggagaaggagtcgtatc 9585288  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 783989 - 783952
Alignment:
Q  159 tgtcattgtttctcttgatttggagaaggagttgtatc 196  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  783989 tgtcattgtttctcttgatttggagaatgagtcgtatc 783952  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 784123 - 784070
Alignment:
Q  25 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 78  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||    
T  784123 agtgtttatactttgggtaccgattcttggaggaggatccaagacttcccatat 784070  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 7430681 - 7430652
Alignment:
Q  159 tgtcattgtttctcttgatttggagaagga 188  Q
    ||||||||||||||||||||||||||||||    
T  7430681 tgtcattgtttctcttgatttggagaagga 7430652  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 7443236 - 7443203
Alignment:
Q  99 tggaatatttgtgagtggcactgttaattggatg 132  Q
    ||||||||||||| ||||||||||||||||||||    
T  7443236 tggaatatttgtgggtggcactgttaattggatg 7443203  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 9587512 - 9587459
Alignment:
Q  25 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 78  Q
    |||||| |||||||||||||  |||||||||| ||||| | |||||||||||||    
T  9587512 agtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatat 9587459  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 27755555 - 27755587
Alignment:
Q  163 attgtttctcttgatttggagaaggagttgtat 195  Q
    |||||||||||||||||||||||||||||||||    
T  27755555 attgtttctcttgatttggagaaggagttgtat 27755587  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 88876 - 88971
Alignment:
Q  34 actttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaattgg 129  Q
    ||||| ||||| |||  ||||||||| |||  ||||||||||||| |||| || ||  ||  ||  ||||||||||||||||||||||||||||||    
T  88876 actttaggtactgattattggagaagaataaaagacttcccatatgatggtcccttacatgaatcgggaatatttgtgagtggcactgttaattgg 88971  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 51858465 - 51858498
Alignment:
Q  160 gtcattgtttctcttgatttggagaaggagttgt 193  Q
    |||||||||||||||||||||||||| |||||||    
T  51858465 gtcattgtttctcttgatttggagaatgagttgt 51858498  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 51854806 - 51854842
Alignment:
Q  160 gtcattgtttctcttgatttggagaaggagttgtatc 196  Q
    |||||||||||||||||||||||||| | ||||||||    
T  51854806 gtcattgtttctcttgatttggagaatgggttgtatc 51854842  T

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