View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19130_high_3 (Length: 434)
Name: NF19130_high_3
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 33766434 - 33766842
Alignment:
| Q |
18 |
gaatgaggtaacggtagacagtctaaaatacactcctgatggaagctacacaaagcttggaactgtcgccacaatcaacaaaacagacttgttgccaaca |
117 |
Q |
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| T |
33766434 |
gaatgaggtaacggtagacagtctaaaatacactcctgatggaagctacacaaagcttggaactgtcgccacaatcaacaaaacagacttgttgccaaca |
33766533 |
T |
|
| Q |
118 |
ctgtccacattgcgttactttcccaacacggcatctaaaaaattttgctattcatttccagttatcaaaggaaacaaataccttgtgaagactatatact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33766534 |
ctgtccacattgcgttactttcccaacacggcatctaaaaaattttgctattcatttccagttatcaaaggaaacaaataccttgtgaagactatatact |
33766633 |
T |
|
| Q |
218 |
attatggagaatttgatggagggaaaaagccacctgtgttcgatcaaatcgttgaagggacaacatggagcactgttgatacaacagaggactatgccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33766634 |
attatggagaatttgatggagggaaaaagccacctgtgttcgatcaaatcgttgaagggacaacatggagcactgttgatacaacagaggactatgccaa |
33766733 |
T |
|
| Q |
318 |
aggttttagttcatattatgaggttgtggtaatgccccatgggaagaagttgagtgtttgtttgggtaggaatgaacatactggcagcttaagtcccttc |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33766734 |
aggtcttagttcatattatgaggttgtggtaatgccccatgggaagaagttgagtgtttgtttgggtaggaatgaacatactggcagcttaagtcccttc |
33766833 |
T |
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| Q |
418 |
atctctgct |
426 |
Q |
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| T |
33766834 |
atctctgct |
33766842 |
T |
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