View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19130_high_4 (Length: 402)
Name: NF19130_high_4
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 47177919 - 47177707
Alignment:
| Q |
18 |
cagaattcttaatcgcttatgcacaatgtttttaagccaatgtatgtttctgcaacagctaagcccatcaacgcgcgtccggtcaatgctactaatttgt |
117 |
Q |
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| T |
47177919 |
cagaattcttaatcgcttatgcacaatgtttttaagccaatgtatgtttctgcgacagctaagcccatcaacgcgcgtccggtcaatgctactaatttgt |
47177820 |
T |
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| Q |
118 |
agctttgtaaaaatcacggtagttttgctttgggacacagcgaacgagttgaaacagagtgcaatgtgcacataaagattttagagggaaaatgagaact |
217 |
Q |
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| T |
47177819 |
agctttgtaaaaatcacggtggtttcgctttgggacacagcgaacgagttgaaacagagtgcaatgtgcacataaagattttagagggaaaatgagaact |
47177720 |
T |
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| Q |
218 |
gcattattttatg |
230 |
Q |
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| T |
47177719 |
gcattattttatg |
47177707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 47177610 - 47177558
Alignment:
| Q |
295 |
ccaccactatcaaatctgcaaccacaaatccacaatcacaatttaaaaacttt |
347 |
Q |
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| T |
47177610 |
ccaccactatcaaatctgcaaccacaaatccacaatcacaatttaaaaacttt |
47177558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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