View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19130_high_5 (Length: 355)
Name: NF19130_high_5
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 35343912 - 35343592
Alignment:
| Q |
19 |
aagacaaataattagattgtcatttgaaattatgttaagggattataagtgtaattttctctacttttaattagtatataatatacaaaagtgacatgtt |
118 |
Q |
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| T |
35343912 |
aagacaaataattagattgtcatttgaaattatgttaagggattataagtgtaatattctctacttttaattagtatataatatacaaaagtgacatgtt |
35343813 |
T |
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| Q |
119 |
ttggcacggtggctcttttgattcctcgaagtatgtcataagtatatttgttagcatttttctttggttaaatcacaacggtgtccattatttttacttt |
218 |
Q |
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| T |
35343812 |
ttggcacggtggctcttttgattcctcgaagtatgtcataagtatatttgttagcatttttgtttggctaaatcacaacgttgtccattatttttacttt |
35343713 |
T |
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| Q |
219 |
gctcctattttctctccaaaaccagtttttcagccttaggttctagcaatttatgagactataaatttgtctagtagttatccatgtgctatcttttaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35343712 |
gctcctattttctctccaaaaccagtttttcagccttaggttctagcaatttatgagactataaatttgtctagtagttatccatgtgctatcttttaat |
35343613 |
T |
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| Q |
319 |
ctatgtcaagtgtgtctgtac |
339 |
Q |
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|||||||||||||||||||| |
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| T |
35343612 |
ttatgtcaagtgtgtctgtac |
35343592 |
T |
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