View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19130_low_1 (Length: 608)
Name: NF19130_low_1
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 27066855 - 27066258
Alignment:
| Q |
1 |
cggagagaatttcaccacctatggaactcacaaactcaatggaatcgacgcgttcaagaattactccaacggtttatacaacgaaaaacacaacgaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066855 |
cggagagaatttcaccacctatggaactcacaaactcaatggaatcgacgcgttcaagaattactccaacggtttatacaacgaaaaacacaacgaattc |
27066756 |
T |
|
| Q |
101 |
gcaagatacagcaaaatctccaccggccacaatgacagtttcaaaaactacgccttaaacaacaatgagggtgtgcaaaccttcaacagctacggcacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066755 |
gcaagatacagcaaaatctccaccggccacaatgacagtttcaaaaactacgccttaaacaacaatgagggtgtgcaaaccttcaacagctacggcacta |
27066656 |
T |
|
| Q |
201 |
aatccatggctggattcggtgaattcaaagcctactctgaagaaagcaacattcctaacgtaaaattcaccacctacacagcctccgtgaccggaagaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066655 |
aatccatggctggattcggtgaattcaaagcctactctgaagaaagcaacattcctaacctaaaattcaccacctacacagcctccgtgaccggaagaga |
27066556 |
T |
|
| Q |
301 |
acaatcattcgtaagctacagcgatggtggtaactccggtaaccaaagtttcgcaagttacggcaaagactctattcacgcagttaacggtttcactcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066555 |
acaatcattcgtaagctacagcgatggtggtaactccggtaaccaaagtttcgcaagttacggcaaagactctattcacgcagttaacggtttcactcag |
27066456 |
T |
|
| Q |
401 |
tatgcgaaaaatgctaacgtcttcaaatctgatttctctggatattcagaaaaaggctcaagcgctgtagatgctttcgtaagctatagcaagaatttga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27066455 |
tatgcgaaaaatgctaacgtcttcaaatctgatttctctggatattcagaaaaaggctcaagcgctgtagatgctttcgtaagctatagtaagaatttga |
27066356 |
T |
|
| Q |
501 |
acaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagatggagctggttctggtgatgat |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066355 |
acaaacctgagaatactttcaagaactatggtaaaggaagttttgctgctcaagagaaattcaccaattacagagatggagctggttctggtgatgat |
27066258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University