View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19130_low_11 (Length: 254)
Name: NF19130_low_11
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 7461391 - 7461545
Alignment:
| Q |
82 |
cagtggattgaattataatttgacatgaaaattttaatttccaatcatcatttctccaacaatattatattactatattactatagtgttttgtttttat |
181 |
Q |
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| T |
7461391 |
cagtggattgaattataatttgacatcaaaattttaatttccaatcatcatttctccaacaatattata--------ttactatagtgttttgtttttat |
7461482 |
T |
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| Q |
182 |
ttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctg |
244 |
Q |
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| T |
7461483 |
ttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctg |
7461545 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 7446468 - 7446557
Alignment:
| Q |
155 |
tatattactatagtgttttgtttttatttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctg |
244 |
Q |
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| T |
7446468 |
tatattactatagtgttttgtttttatttgtctcaacacaacaccagtaacgtcaatttagggcaagcatgttaccatgtttcttctctg |
7446557 |
T |
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