View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19130_low_7 (Length: 321)
Name: NF19130_low_7
Description: NF19130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19130_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 7460759 - 7461048
Alignment:
| Q |
19 |
acagttagtaacaaaagacacaaaaatataacaatgaatcatcatcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaatacacccaaa |
118 |
Q |
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| T |
7460759 |
acagttagtaacaaaagacacaaaaatataacaatgaatca---tcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaatacacccaaa |
7460855 |
T |
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| Q |
119 |
tcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgtatcatcaaaatttctatgaagttataatatttttgttatgnnnnn |
218 |
Q |
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| T |
7460856 |
tcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgtatcatcaaaatttctatgaagttataatatttttgttatgttttt |
7460955 |
T |
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| Q |
219 |
nnaggagagaagaaaccaaagccaagacgcaagcgtagtaagaagaacaaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaa |
311 |
Q |
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| T |
7460956 |
ttaggagagaagaaaccaaagccaagacgcaagcgtagtaagaagaacaaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaa |
7461048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 7445815 - 7446104
Alignment:
| Q |
19 |
acagttagtaacaaaagacacaaaaatataacaatgaatcatcatcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaatacacccaaa |
118 |
Q |
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| T |
7445815 |
acagttagtaacaaaagacacaaaaatataacaatgaatca---tcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaatacacccaaa |
7445911 |
T |
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| Q |
119 |
tcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgtatcatcaaaatttctatgaagttataatatttttgttatgnnnnn |
218 |
Q |
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| T |
7445912 |
tcatttctcaacaaggttagcatcatattaaattaatacataacattttatatgtatcatcaaaatttctatgaagttataatatttttgttatgttttt |
7446011 |
T |
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| Q |
219 |
nnaggagagaagaaaccaaagccaagacgcaagcgtagtaagaagaacaaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaa |
311 |
Q |
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| T |
7446012 |
ttaggagagaagaaaccaaagccaagacgcaagcgtagtaagaagaacaaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaa |
7446104 |
T |
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